Job Description P77269 Confidence 99.93% Date Thu Jan 5 12:27:02 GMT 2012 Rank 68 Aligned Residues 252 % Identity 16% Template c3h5tA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum Resolution 2.53 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	Y	Y	A	G	V	R	Q	G	V	Q	D	A	A	K	D	S	S	V	Q	V	Q	L	I	E	T	N	A	Q	G	D	I	S	K	E	S	T	F	V	D	T	L	V	A	R	N	V	D	A	I	I	L	S	A	V	S	E	N	G	S	S	R	T	V	R	R	A	S	E	A	G	I	P	V	I	C	Y	N	T
Query Conservation
Alig confidence																										.	.	.																																	.	.
Template Conservation																										.	.	.																																	.	.
Template Sequence		D	M	A	S	V	D	F	L	A	G	V	A	Q	A	A	G	D	T	Q	L	T	L	I	P	.	.	.	A	S	P	A	S	S	V	D	H	V	S	A	Q	Q	L	V	N	N	A	A	V	D	G	V	V	I	Y	S	V	A	K	G	.	.	D	P	H	I	D	A	I	R	A	R	G	L	P	A	V	I	A	D	Q
Template Known Secondary structure		S														S	S	S								.	.	.					T	T												T				S						S			T	T	.	.											T							S	S
Template Predicted Secondary structure																										.	.	.																																	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.																			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	I	N	Q	K	G	V	D	K	Y	V	S	A	Y	L	V	G	D	P	L	E	F	G	K	K	L	G	N	A	A	A	D	Y	F	I	A	N	K	I	D	Q	P	K	I	A	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	C	E	A	F	E	V	C	V	Q	R	R	K	G	F
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	A	R	E	E	G	M	P	F	I	A	P	N	N	R	K	A	I	A	P	A	A	Q	A	.	.	.	.	.	.	.	.	.	.	.	L	I	D	A	G	H	R	K	I	G	I	L	S	I	R	L	D	R	A	N	N	D	G	E	V	T	R	E	R	L	E	N	A	Q	Y	Q	V	Q	R	D	R	V	R	G	A
Template Known Secondary structure				S		T	T												T							.	.	.	.	.	.	.	.	.	.	.				T	T			S									S	S	S													T				T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.												.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.																																																			.	.
Query SS confidence													.	.																																																			.	.
Query Sequence		E	E	V	L	K	S	R	V	P	G	A	.	.	Q	I	V	A	N	Q	E	G	T	V	L	D	K	A	I	S	V	G	E	K	L	I	I	S	T	P	D	L	N	A	I	M	G	E	S	G	G	A	T	L	G	A	V	K	A	V	R	N	Q	N	.	.	Q	A	G	K	I	A	V	F	G	S	D	M	T	T	E
Query Conservation													.	.																																																			.	.
Alig confidence													.	.																																																			.	.
Template Conservation
Template Sequence		M	E	V	F	I	E	A	G	I	D	P	G	T	V	P	I	M	E	C	W	I	N	N	R	Q	H	N	F	E	V	A	K	E	L	L	E	T	H	P	D	L	T	A	V	L	C	T	V	D	A	L	A	F	G	V	L	E	Y	L	K	S	V	G	K	S	A	P	A	D	L	S	L	T	G	F	D	G	T	H	M
Template Known Secondary structure									T			G	G	G	S						S	S																		T	T							S	S														T	T			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	Q	E	L	E	N	N	Q	V	L	K	A	V	V	D	I	S	G	K	K	M	G	N	A	V	F	A	Q	T	L	K	V	I	N	K	Q	A	D	G	E	K	V	I	Q	V	P	I	D	L	Y	T	K	T	E	D	G
Query Conservation
Alig confidence				.	.	.	.	.	.																																		.
Template Conservation				.	.	.	.	.	.																																		.
Template Sequence		A	L	.	.	.	.	.	.	A	R	D	L	T	T	V	I	Q	P	N	K	L	K	G	F	K	A	G	E	T	L	L	K	M	I	D	K	E	Y	V	E	P	.	E	V	E	L	E	T	S	F	H	P	G	S	T	V	A
Template Known Secondary structure				.	.	.	.	.	.		T	T																								T	T					S	.												S
Template Predicted Secondary structure				.	.	.	.	.	.																																		.
Template SS confidence
		309	310							.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.		.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions