Job Description P77269 Confidence 99.97% Date Thu Jan 5 12:27:02 GMT 2012 Rank 63 Aligned Residues 243 % Identity 14% Template c3gybB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulators (laci-family PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum Resolution 1.60 Å

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		30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		E	M	T	I	G	A	I	Y	L	D	T	.	Q	G	Y	Y	A	G	V	R	Q	G	V	Q	D	A	A	K	D	S	S	V	Q	V	Q	L	I	E	T	N	A	Q	G	D	I	S	K	E	S	T	F	V	D	T	L	V	A	R	N	V	D	A	I	I	L	S	A	V	S	E	N	G	S	S	R	T	V	R	R	A
Query Conservation													.
Alig confidence													.																																			.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Q	L	I	A	V	L	I	D	D	Y	S	N	P	W	F	I	D	L	I	Q	S	L	S	D	V	L	T	P	K	G	Y	R	L	S	V	I	D	S	L	T	S	Q	A	G	T	.	.	.	D	P	I	T	S	A	L	S	X	R	P	D	G	I	I	I	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S		T	T	S	G	G	G												G	G	G	T								S	S	S	S		S	S	S	.	.	.								T	T			S							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	A	G	I	P	V	I	C	Y	N	T	C	I	N	Q	K	G	V	D	K	Y	V	S	A	Y	L	V	G	D	P	L	E	F	G	K	K	L	G	N	A	A	A	D	Y	F	I	A	N	K	I	D	Q	P	K	I	A	V	I	N	C	E	A	F	E	V	C	V	Q	R	R	K	G	F	E	E	V	L	K	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.														.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.														.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	D	I	P	D	F	T	V	P	D	S	L	P	D	S	V	A	N	D	D	F	R	G	A	E	I	A	T	K	H	L	I	D	.	.	.	.	.	.	L	G	H	T	H	I	A	H	L	R	V	G	S	.	G	A	G	L	R	R	F	E	S	F	E	A	T	X	R	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	S	S				B																								.	.	.	.	.	.	T	T			S							S	S	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.														.
Template SS confidence
														127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.							.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		R	V	P	G	A	Q	I	V	A	N	Q	E	G	T	V	L	D	K	A	I	S	V	G	E	K	L	I	I	S	T	P	D	L	N	A	I	M	G	E	S	G	G	A	T	L	G	A	V	K	A	V	R	N	Q	N	Q	.	.	A	G	K	I	A	V	F	G	S	D	M	T	T	E	I	A	Q	E	L	E	N	N
Query Conservation																																																										.	.
Alig confidence																																																										.	.																.	.	.	.
Template Conservation																																																																											.	.	.	.
Template Sequence		H	G	L	E	P	L	S	N	D	Y	L	G	P	A	V	E	H	A	G	Y	T	E	T	L	A	L	L	K	E	H	P	E	V	T	A	I	F	S	S	N	D	I	T	A	I	G	A	L	G	A	A	R	E	L	G	L	R	V	P	E	D	L	S	I	I	G	Y	D	N	T	P	L	A	.	.	.	.	Q	T	R
Template Known Secondary structure		T	T										S																			T	T							S	S															T			T	T	T	T							S						.	.	.	.		S	T
Template Predicted Secondary structure																																																																											.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.					.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	L	K	A	V	V	D	I	S	G	K	K	M	G	N	A	V	F	A	Q	T	L	K	V	I	N	K	Q	A	D	G	E	K	V	I	Q	V	P	I	D	L	Y	T	K	T	E	D	G	K	Q
Query Conservation
Alig confidence																																.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.
Template Sequence		L	I	N	L	T	T	I	D	D	N	S	I	G	V	G	Y	N	A	A	L	L	L	L	S	X	L	E	I	X	H	.	.	.	.	.	.	T	L	Q	P	S	L	I	E	R	G	T	C	A	P	R
Template Known Secondary structure		T	T																												S	.	.	.	.	.	.										S	S
Template Predicted Secondary structure																																.	.	.	.	.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.							.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions