Job Description P77269 Confidence 100.00% Date Thu Jan 5 12:27:02 GMT 2012 Rank 4 Aligned Residues 279 % Identity 20% Template c3g1wB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:sugar abc transporter; PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans Resolution 2.02 Å

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		30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		E	M	T	I	G	A	I	Y	L	D	T	.	Q	G	Y	Y	A	G	V	R	Q	G	V	Q	D	A	A	K	D	S	S	V	Q	V	Q	L	I	E	T	N	A	Q	G	D	I	S	K	E	S	T	F	V	D	T	L	V	A	R	N	V	D	A	I	I	L	S	A	V	S	E	N	G	S	S	R	T	V	R	R	A
Query Conservation													.
Alig confidence													.																											.
Template Conservation																																								.
Template Sequence		N	E	T	Y	X	X	I	T	F	Q	S	G	X	D	Y	W	K	R	C	L	K	G	F	E	D	A	A	Q	A	L	N	V	T	V	E	Y	R	G	.	A	A	Q	Y	D	I	Q	E	Q	I	T	V	L	E	Q	A	I	A	K	N	P	A	G	I	A	I	S	A	I	D	P	V	E	L	T	D	T	I	N	K	A
Template Known Secondary structure											S	T	T	S	T																	T								.		S	S	S																		S							S	S	T	T	T	T
Template Predicted Secondary structure																																								.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	A	G	I	P	V	I	C	Y	N	T	C	I	N	Q	K	G	V	D	K	Y	V	S	A	Y	L	V	G	D	P	L	E	F	G	K	K	L	G	N	A	A	A	D	Y	F	I	A	N	K	I	D	Q	P	K	I	A	V	I	N	C	E	A	F	E	V	C	V	Q	R	R	K	G	F	E	E	V	L	K	S
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.
Template Sequence		V	D	A	G	I	P	I	V	L	F	D	S	G	A	P	D	S	H	A	H	S	F	L	G	T	.	.	.	.	.	.	.	.	N	N	Y	N	A	G	X	N	A	A	Y	K	X	A	E	L	L	D	G	E	G	E	V	A	V	I	T	L	P	N	Q	L	N	H	Q	E	R	T	T	G	F	K	E	T	L	E	A
Template Known Secondary structure				T	T							S	S			T	T	S			S						.	.	.	.	.	.	.	.																	T	T	T										T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.									.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		189	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		R	V	P	G	A	.	Q	I	V	A	N	Q	E	G	T	V	L	D	K	A	I	S	V	G	E	K	L	I	I	S	T	P	D	L	N	A	I	M	G	E	S	G	G	A	T	L	G	A	V	K	A	V	R	N	Q	N	Q	A	G	K	I	A	V	F	G	S	D	M	T	T	E	I	A	Q	E	L	E	N	N	Q
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		E	F	P	A	I	E	V	I	A	V	E	D	G	R	G	D	S	L	H	S	R	R	V	A	H	Q	L	L	E	D	Y	P	N	L	A	G	I	F	A	T	E	A	N	G	G	V	G	V	G	D	A	V	R	L	E	S	R	A	G	E	I	Q	I	I	S	F	D	T	D	K	G	T	L	D	L	V	D	E	G	I
Template Known Secondary structure				T	T										T	T																	T	T							S	S														T	T		T	T	T	S						S											T	T	S
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.										.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	K	A	V	V	D	I	S	G	K	K	M	G	N	A	V	F	A	Q	T	L	K	V	I	N	K	Q	A	D	G	.	.	.	.	.	.	.	.	.	E	K	V	I	Q	V	P	I	D	L	Y	T	K	T	E	D	G	K	Q	W
Query Conservation																																	.	.	.	.	.	.	.	.	.
Alig confidence				.																													.	.	.	.	.	.	.	.	.
Template Conservation				.
Template Sequence		I	S	.	A	T	L	A	Q	G	T	W	N	X	G	Y	W	S	L	T	Y	L	F	H	L	H	H	G	L	T	E	P	Q	I	L	R	E	E	A	P	L	P	L	Y	V	D	T	G	I	T	I	V	T	D	E	N	V	D	Y	Y	Y
Template Known Secondary structure		S		.																							T	T		S			B						B		S		S											T	T	T	G	G	G	G
Template Predicted Secondary structure				.
Template SS confidence
		273	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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