Job Description P77269 Confidence 98.87% Date Thu Jan 5 12:27:02 GMT 2012 Rank 73 Aligned Residues 226 % Identity 9% Template c3eafA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix Resolution 2.00 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.												60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure															.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	M	T	I	G	A	I	Y	L	D	T	Q	G	.	.	.	Y	Y	A	G	V	R	Q	G	V	Q	D	A	A	K	D	S	S	.	.	.	.	.	.	.	.	.	.	.	V	Q	V	Q	L	I	E	T	N	A	Q	G	D	I	S	K	E	S	T	F	V	D	T	L	V	A	R	N	V	D	A	I	I	L	S	A
Query Conservation															.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.																		.	.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation																																																																																	.
Template Sequence		T	I	N	V	G	L	L	V	D	E	T	G	P	T	S	D	V	G	K	G	Y	S	L	G	A	E	L	A	F	K	Y	F	N	E	K	G	I	Y	T	K	D	G	V	R	V	N	I	N	Y	I	K	R	D	Y	A	Y	N	P	T	T	A	E	E	Y	Y	R	E	F	R	D	R	Y	G	V	I	A	I	I	G	.
Template Known Secondary structure											S	S	S	T	T																										T	T														T	T															T	T			S					.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	E	N	G	S	S	R	T	V	R	R	A	S	E	A	G	I	P	V	I	C	Y	N	T	C	I	N	Q	K	G	V	D	K	Y	V	S	A	Y	L	V	G	D	P	L	E	F	G	K	K	L	G	N	A	A	A	D	Y	F	I	A	N	K	I	D	Q	P	K	I	A	V	I	N	C	E	A	F	E	V	C
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.
Template Sequence		W	G	T	A	D	T	E	K	L	S	D	Q	V	D	T	D	K	I	T	Y	I	S	A	S	Y	S	A	K	L	L	V	K	P	.	.	.	.	.	.	.	F	N	F	Y	P	A	P	D	Y	S	T	Q	A	C	S	G	L	A	F	L	A	S	E	F	G	Q	G	K	L	A	L	A	Y	D	S	K	V	A	Y	S
Template Known Secondary structure																		T						S				G	G	G	T	T	S	T	.	.	.	.	.	.	.	T				S	S																				S									T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.								.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	R	R	K	G	F	E	E	V	L	K	S	R	V	P	G	A	Q	I	V	A	N	Q	E	G	T	V	L	D	K	A	I	S	V	G	E	K	L	I	I	S	T	P	D	L	N	A	I	M	G	E	S	G	G	A	T	L	G	A	V	K	A	V	R	N	Q	N	Q	A	G	K	I	A	V	F	G	S	D	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	S	P	I	G	A	I	K	K	A	A	P	S	L	G	L	Q	V	V	G	D	Y	D	L	P	L	R	A	T	E	A	D	A	E	R	I	A	R	E	X	L	A	A	D	P	D	Y	V	W	C	G	N	T	I	S	S	C	S	L	L	G	R	A	X	A	K	V	G	L	D	A	F	L	L	T	N	V	W	G	F
Template Known Secondary structure			T	T								T	G	G	G	T											T	T															T	T			S						S																T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		256	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	E	I	A	Q	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	R	S	P	Q	L	I
Template Known Secondary structure		S	T	T
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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