Job Description P77269 Confidence 99.96% Date Thu Jan 5 12:27:02 GMT 2012 Rank 67 Aligned Residues 230 % Identity 18% Template c3e61A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional repressor of ribose operon; PDBTitle: crystal structure of a putative transcriptional repressor of ribose2 operon from staphylococcus saprophyticus subsp. saprophyticus Resolution 2.00 Å

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		33	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		I	G	A	I	Y	L	D	T	.	Q	G	Y	Y	A	G	V	R	Q	G	V	Q	D	A	A	K	D	S	S	V	Q	V	Q	L	I	E	T	N	A	Q	G	D	I	S	K	E	S	T	F	V	D	T	L	V	A	R	N	V	D	A	I	I	L	S	A	V	S	E	N	G	S	S	R	T	V	R	R	A	S	E	A
Query Conservation										.
Alig confidence										.																										.	.																															.	.	.	.
Template Conservation																																				.	.																															.	.	.	.
Template Sequence		I	G	L	L	L	P	D	M	S	N	P	F	F	T	L	I	A	R	G	V	E	D	V	A	L	A	H	G	Y	Q	V	L	I	G	.	.	N	S	D	N	D	I	K	K	A	Q	G	Y	L	A	T	F	V	S	H	N	C	T	G	M	I	S	T	A	F	N	.	.	.	.	E	N	I	I	E	N	T	L	T	D
Template Known Secondary structure							S		T	T	S																	T	T							.	.			T	T															T	T		S						G	G	G	.	.	.	.
Template Predicted Secondary structure																																				.	.																															.	.	.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.					.	.	.	.	130	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	P	V	I	C	Y	N	T	C	I	N	Q	K	G	V	D	K	Y	V	S	A	Y	L	V	G	D	P	L	E	F	G	K	K	L	G	N	A	A	A	D	Y	F	I	A	N	K	I	D	Q	P	K	I	A	V	I	N	C	E	A	F	E	V	C	V	Q	R	R	K	G	F	E	E	V	L	K	S	R	V	P
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	I	P	F	V	F	I	D	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	H	F	K	G	G	Q	L	Q	A	E	V	V	R	K	G	K	G	K	N	V	L	I	V	H	E	N	L	L	I	D	A	F	H	Q	R	V	Q	G	I	K	Y	I	L	D	Q	D	Y	K
Template Known Secondary structure								G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T	T			S						S		T	T	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.																						.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		G	A	Q	I	V	A	N	Q	E	G	T	V	L	D	K	A	I	S	V	G	E	K	L	I	I	S	T	P	D	L	N	A	I	M	G	E	S	G	G	A	T	L	G	A	V	K	A	V	R	N	Q	N	.	.	Q	A	G	K	I	A	V	F	G	S	D	M	T	T	E	I	A	Q	E	L	E	N	N	Q	V	L
Query Conservation																																																						.	.
Alig confidence																	.	.	.	.	.	.	.	.																														.	.																	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.																																																.	.	.	.
Template Sequence		M	L	E	A	T	L	L	D	N	D	K	K	F	I	D	.	.	.	.	.	.	.	.	L	I	K	E	L	S	I	D	S	I	I	C	S	N	D	L	L	A	I	N	V	L	G	I	V	Q	R	Y	H	F	K	V	P	A	E	I	Q	I	I	G	Y	D	N	I	P	F	S	.	.	.	.	E	M	T	Y	P	Q
Template Known Secondary structure					G	G	G	G	G	S							.	.	.	.	.	.	.	.						T							S	S														T	T			T	T	T	T						S	B			G	G	G	.	.	.	.	G	T	S	S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.																																																.	.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.									.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.					270	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	V	V	D	I	S	G	K	K	M	G	N	A	V	F	A	Q	T	L	K	V	I	N	K	Q	A	D	G	E	K	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	T	I	D	Q	S	A	Y	H	L	G	E	I	A	V	S	Q	L	L	A	L	T	V	K	H	R	G	S	T	R	H
Template Known Secondary structure			B																										T	T
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions