Job Description P77269 Confidence 100.00% Date Thu Jan 5 12:27:02 GMT 2012 Rank 31 Aligned Residues 261 % Identity 15% Template c3e3mA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a laci family transcriptional2 regulator from silicibacter pomeroyi Resolution 1.60 Å

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		32	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		T	I	G	A	I	Y	L	D	T	.	Q	G	Y	Y	A	G	V	R	Q	G	V	Q	D	A	A	K	D	S	S	V	Q	V	Q	L	I	E	T	N	A	Q	G	D	I	S	K	E	S	T	F	V	D	T	L	V	A	R	N	V	D	A	I	I	L	S	A	V	S	E	N	G	S	S	R	T	V	R	R	A	S	E
Query Conservation											.
Alig confidence											.																										.	.																																	.	.
Template Conservation																																					.	.																																	.	.
Template Sequence		F	V	G	L	L	L	P	S	L	N	N	L	H	F	A	Q	T	A	Q	S	L	T	D	V	L	E	Q	G	G	L	Q	L	L	L	G	.	.	Y	T	A	Y	S	P	E	R	E	E	Q	L	V	E	T	M	L	R	R	R	P	E	A	M	V	L	S	Y	D	G	H	T	.	.	E	Q	T	I	R	L	L	Q	R
Template Known Secondary structure								S		S	S																		T	T							.	.			T	T															T			S							S				.	.
Template Predicted Secondary structure																																					.	.																																	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	I	P	V	I	C	Y	N	T	C	I	N	Q	K	G	V	D	K	Y	V	S	A	Y	L	V	G	D	P	L	E	F	G	K	K	L	G	N	A	A	A	D	Y	F	I	A	N	K	I	D	Q	P	K	I	A	V	I	N	C	E	A	F	E	V	C	V	Q	R	R	K	G	F	E	E	V	L	K	S	R	V
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.
Template Sequence		A	S	I	P	I	V	E	I	W	E	K	P	A	H	P	I	G	H	T	V	G	F	.	.	.	.	.	.	.	.	.	S	N	E	R	A	A	Y	D	M	T	N	A	L	L	A	R	G	F	R	K	I	V	F	L	G	E	K	D	D	D	W	T	R	G	A	A	R	R	A	G	F	K	R	A	M	R	E	A	G
Template Known Secondary structure				S						S	S			S	S		S	S						.	.	.	.	.	.	.	.	.																T	T			S							S	S		T	T	S																T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.										.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		191	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure					.	.																																																			.	.
Query SS confidence					.	.																																																			.	.
Query Sequence		P	G	A	.	.	Q	I	V	A	N	Q	E	G	T	V	L	D	K	A	I	S	V	G	E	K	L	I	I	S	T	P	D	L	N	A	I	M	G	E	S	G	G	A	T	L	G	A	V	K	A	V	R	N	Q	N	.	.	Q	A	G	K	I	A	V	F	G	S	D	M	T	T	E	I	A	Q	E	L	E	N	N
Query Conservation					.	.																																																			.	.
Alig confidence					.	.																																																			.	.																				.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		L	N	P	D	Q	E	I	R	L	G	A	P	P	L	S	I	E	D	G	V	A	A	A	E	L	I	L	Q	E	Y	P	D	T	D	C	I	F	C	V	S	D	M	P	A	F	G	L	L	S	R	L	K	S	I	G	V	A	V	P	E	Q	V	S	V	V	G	F	G	N	F	E	V	S	R	F	A	.	.	.	.
Template Known Secondary structure		S		S							S		S	S																		T	T							S	S															T			T	T	T	T						S	S								S	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	L	K	A	V	V	D	I	S	G	K	K	M	G	N	A	V	F	A	Q	T	L	K	V	I	N	K	Q	A	D	G	E	K	V	I	Q	V	P	I	D	L	Y	T	K	T	E	D
Query Conservation
Alig confidence																															.	.	.	.	.
Template Conservation																															.	.	.	.	.
Template Sequence		S	P	E	I	S	T	V	R	V	D	P	I	A	I	G	R	E	T	G	S	L	I	L	R	L	L	D	A	Q	.	.	.	.	.	H	I	T	L	P	P	V	L	E	F	R	P	S	L
Template Known Secondary structure		S	S			B																					T				.	.	.	.	.												T	T	S
Template Predicted Secondary structure																															.	.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.						.	.	.	.	.	.	.	.	330	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions