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Job DescriptionP77269
Confidence100.00%DateThu Jan 5 12:27:02 GMT 2012
Rank17Aligned Residues268
% Identity19%Templatec3brsA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  EMTIGAIYL. . . DTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVR
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Template Sequence  QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAK
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   107..110.........120.........130.........140.........150.........160.........170.........180......
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Query Sequence  RASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVL
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Template Sequence  EIKDAGIKLIVIDSGMKQDIADITVAT. . . . . . . . DNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIG
Template Known Secondary structure  TTGGGT
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   85....90.........100.........110. ........120.........130.........140.........150......
 
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Query Sequence  KSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENN
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Template Sequence  LSDDSNKIEAIYYCDSNYDKAYDGTVELLTKYPDISVMVGLNQYSATGAARAIKDMSLEAKVKLVCIDSSM. . . . . . EQE
Template Known Secondary structure  GGGGGG
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   157..160.........170.........180.........190.........200.........210.........220....... ..230
 
   267..270.........280.........290.........300.........310..
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Query Sequence  QVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKT
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Template Sequence  GIFEAMVVQKPFNIGYLGVEKALKLLKKE. YVPKQLDSGCALITKD
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   236...240.........250.........260.... .....270.........280
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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