Job Description P77269 Confidence 99.92% Date Thu Jan 5 12:27:02 GMT 2012 Rank 70 Aligned Residues 263 % Identity 14% Template c2fqxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:membrane lipoprotein tmpc; PDBTitle: pnra from treponema pallidum complexed with guanosine Resolution 1.70 Å

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		30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure										.	.	.	.
Query SS confidence										.	.	.	.
Query Sequence		E	M	T	I	G	A	I	Y	.	.	.	.	L	D	T	Q	G	Y	Y	A	G	V	R	Q	G	V	Q	D	A	A	K	D	S	S	V	Q	V	Q	L	I	E	T	N	A	Q	G	D	I	S	K	E	S	T	F	V	D	T	L	V	A	R	N	V	D	A	I	I	L	S	A	V	S	E	N	G	S	S	R	T	V
Query Conservation										.	.	.	.
Alig confidence										.	.	.	.																																				.	.	.
Template Conservation																																																	.	.	.
Template Sequence		D	F	V	V	G	M	V	T	D	S	G	D	I	D	D	K	S	F	N	Q	Q	V	W	E	G	I	S	R	F	A	Q	E	N	N	A	K	C	K	Y	V	T	A	S	T	D	A	E	.	.	.	Y	V	P	S	L	S	A	F	A	D	E	N	M	G	L	V	V	A	C	G	S	F	L	V	E	A	V	I	E	T
Template Known Secondary structure										S	S	S		T	T	S	S	S																T	T										S	G	G	G	.	.	.											T	T		S						S	T	T	T
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.				.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	A	S	E	A	G	I	P	V	I	C	Y	N	T	C	I	N	Q	K	G	V	D	K	Y	V	S	A	Y	L	V	G	D	P	L	E	F	G	K	K	L	G	N	A	A	A	D	Y	F	I	A	N	K	I	D	Q	P	K	I	A	V	I	N	C	E	A	F	E	V	C	V	Q	R	R	K	G	F	E	E	V
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.
Template Sequence		S	A	R	F	P	K	Q	K	F	L	V	I	D	A	V	V	Q	D	R	D	N	V	V	S	A	V	F	G	Q	N	E	G	S	F	L	V	G	V	A	A	A	L	.	.	.	.	.	.	.	K	A	K	E	A	G	K	S	A	V	G	F	I	V	G	M	E	L	G	M	M	P	L	F	E	A	G	F	E	A	G
Template Known Secondary structure						T	T	S						S	S				S		T	T																						.	.	.	.	.	.	.					T	T									S			S	T	T	T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.								.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																					.	.																																									.
Query SS confidence																					.	.																																									.
Query Sequence		L	K	S	R	V	P	G	A	Q	I	V	A	N	Q	E	G	T	V	L	.	.	D	K	A	I	S	V	G	E	K	L	I	I	S	T	P	D	L	N	A	I	M	G	E	S	G	G	A	T	L	G	A	V	K	A	V	R	N	Q	N	Q	.	A	G	K	I	A	V	F	G	S	D	M	T	T	E	I	A	Q	E
Query Conservation																					.	.																																									.
Alig confidence																					.	.														.	.																										.
Template Conservation																																				.	.
Template Sequence		V	K	A	V	D	P	D	I	Q	V	V	V	E	V	A	N	T	F	S	D	P	Q	K	G	Q	A	L	A	A	K	L	Y	D	S	.	.	G	V	N	V	I	F	Q	V	A	G	G	T	G	N	G	V	I	K	E	A	R	D	R	R	L	N	G	Q	D	V	W	V	I	G	V	D	R	D	Q	Y	M	D	G	V
Template Known Secondary structure							T	T									S		S	S															T	.	.	T									G	G	G														T	T										S			G	G	G	G	B
Template Predicted Secondary structure																																				.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		263	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		L	E	N	N	.	Q	V	L	K	A	V	V	D	I	S	G	K	K	M	G	N	A	V	F	A	Q	T	L	K	V	I	N	K	Q	A	D	G	E	K	V	I	Q	V	P	I	D
Query Conservation						.
Alig confidence						.																									.	.	.
Template Conservation																															.	.	.
Template Sequence		Y	D	G	S	K	S	V	V	L	T	S	M	V	K	R	A	D	V	A	A	E	R	I	S	K	M	A	Y	D	.	.	.	G	S	F	P	G	G	Q	S	I	M	F	G	L	E
Template Known Secondary structure			S	S	S		B	S																							.	.	.	T				T	T							G	G
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions