Phyre 2 alignment of P24555 with d1orva1

Job Description P24555
Confidence 99.30% Date Thu Jan 5 11:41:42 GMT 2012

Rank 116 Aligned Residues 267

% Identity 11% Template d1orva1

SCOP info 8-bladed beta-propeller DPP6 N-terminal domain-like DPP6 N-terminal domain-like

Resolution 1.80

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.																					.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	M	G	G	M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	E	L	L	D	N	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.
Template Sequence	T	Q	W	I	T	W	S	P	V	G	H	K	L	A	Y	V	W	N	N	D	.	.	.	.	.	.	I	Y	V	K	N	E	P	N	L	S	S	Q	R	I	T	W	T	G	K	E	N	V	I	Y	N	G	V	T	D	W	V	Y	E	E	E	V	F	S	A	Y	S	A	L	W	W	S	P	N	G	T	F	L	A	Y
Template Known Secondary structure	B	S						S	S	T	T							T	T		.	.	.	.	.	.					S	S	T	T	S							S			B	T	T	T				S	B									T	T	S	S	S	B						T	T	S	S
Template Predicted Secondary structure																					.	.	.	.	.	.
Template SS confidence
	152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.							.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

	189	190	.	.	.	.	.	.	.	.	.	200	.																															.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.									220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Query Sequence	V	R	K	H	P	V	T	L	L	P	Y	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	R	H	A	I	G	T	P	A	S	Q	D	K	L	I	Y	E	E	.	.	.	.	.	.	.	.	K	D	D	T	Y	Y	V	S	L	H	K
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	Q	F	N	D	T	E	V	P	L	I	E	Y	S	F	Y	S	D	E	S	L	Q	Y	P	K	T	V	R	I	P	Y	P	K	A	G	A	E	N	P	T	V	K	F	F	V	V	D	T	R	T	L	S	P	N	A	S	V	T	S	Y	Q	I	V	P	P	A	S	V	L	I	G	D	H	Y	L	C	G	V	T	W
Template Known Secondary structure						T	T	S										S	T	T		S	S											T	T	S												G	G	G			T	T	S															T	S
Template Predicted Secondary structure
Template SS confidence
	226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

	231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.																.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H	E	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	H	Y	Q	H	R	F	Y	L	R	S	N	R	H	G	K	N	F	G	L
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.
Template Sequence	V	T	E	E	.	R	I	S	L	Q	W	I	R	R	A	Q	N	Y	S	I	I	D	I	C	D	Y	D	E	S	T	G	R	W	I	S	S	V	A	R	Q	H	I	E	I	S	T	T	G	W	V	G	R	F	R	P	A	E	P	H	F	T	S	D	G	N	S	F	Y	K	I	I	S	N	E	E	G	Y	K	H	I
Template Known Secondary structure			T	T	.									T	T	S	S											T	T	T	T						G	G	G							S	S	S		S	S	S	S	S								T	T	S	S									T	T	S
Template Predicted Secondary structure					.
Template SS confidence
	306	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

	296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.					.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.			.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.																						.	.
Query SS confidence																																										.	.	.	.																						.	.
Query Sequence	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	.	.	.	.	L	T	S	L	R	Q	I	N	R	K	T	R	E	V	I	G	I	A	F	D	D	.	.	P	A	Y	V	T	W	I	A	Y	N	P	E
Query Conservation																																										.	.	.	.																						.	.
Alig confidence													.	.																												.	.	.	.																						.	.
Template Conservation													.	.
Template Sequence	C	H	F	Q	T	D	K	S	N	C	T	F	.	.	I	T	K	G	A	W	E	V	I	G	I	E	A	L	T	S	D	Y	L	Y	Y	I	S	N	E	H	K	G	M	P	G	G	R	N	L	Y	R	I	Q	L	N	D	Y	T	K	V	T	C	L	S	C	E	L	N	P	E	R	C	Q	Y	Y	S	A	S	F	S
Template Known Secondary structure					T	T		S					.	.	S			S	S	S										S	S							S		G	G	G		T	T		B							T	T								S	S	T	T	T	S	T	T	T	B		B
Template Predicted Secondary structure													.	.
Template SS confidence
	385	.	.	.	.	390	.	.	.	.	.	.			.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.

	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	T	P	D	T	L	F	E	L	D	M	D	T	G	E	R	R	V	L	K	Q	T	E
Query Conservation
Alig confidence																	.
Template Conservation																	.
Template Sequence	N	K	A	K	Y	Y	Q	L	R	C	F	G	P	G	L	P	.	L	Y	T	L	H	S	S	S	S	D	K	E	L	R	V	L	E	D	N
Template Known Secondary structure	T	T	S	S								S	B	S	S		.							T	T	T	T
Template Predicted Secondary structure																	.
Template SS confidence
	463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.		.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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