Job Description P24555 Confidence 67.94% Date Thu Jan 5 11:41:42 GMT 2012 Rank 392 Aligned Residues 278 % Identity 11% Template c4a11B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:dna excision repair protein ercc-8; PDBTitle: structure of the hsddb1-hscsa complex Resolution 3.31 Å

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		129	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170																.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure										.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	G	G	M	A	I	T	P	.	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	E	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H
Query Conservation										.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.							.								.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.								.	.	.	.
Template Sequence		I	N	T	L	D	I	E	P	V	E	G	R	Y	M	L	.	S	G	G	S	D	G	V	.	.	.	.	I	V	L	Y	D	L	E	N	S	S	R	Q	S	Y	Y	T	C	K	A	V	C	S	I	G	R	D	H	P	D	V	H	R	Y	S	V	E	T	V	Q	W	Y	P	H	D	T	G	M	F	T	S	S	S	F
Template Known Secondary structure									T	T	T						.				T	T	S		.	.	.	.										S	S	S	S												T	T		T	T			S	S									T	T		T	T							T
Template Predicted Secondary structure																	.								.	.	.	.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.					.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	T	L	L	P	Y	Q	V	W	R	H	A	I	G	T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H	E
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.
Template Sequence		D	K	T	L	K	V	W	D	.	.	.	.	.	.	.	.	.	T	N	T	L	Q	T	A	D	V	F	N	F	E	E	T	V	Y	S	H	H	M	S	P	V	S	T	K	H	C	L	V	A	V	G	T	R	G	P	K	V	Q	L	C	D	L	K	S	G	S	C	S	H	I	L	Q	G	H	R	Q	E	I	L	A
Template Known Secondary structure		T	S							.	.	.	.	.	.	.	.	.	T	T	T	T									S	S									S	S		S	S									S	S	S	S						S	S	S	S											S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.										.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.																	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	S	L	D	H	Y	Q	H	R	F	Y	L	R	S	N	R	H	G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.
Template Sequence		V	S	W	S	P	R	Y	D	Y	I	L	A	T	A	S	A	D	S	.	.	.	R	V	K	L	W	D	V	R	R	A	S	G	C	L	I	T	L	D	Q	H	N	G	K	K	S	Q	A	V	E	S	A	N	T	A	H	N	G	K	V	N	G	L	C	F	T	S	D	G	L	H	L	L	T	V	G	T	D	N	R
Template Known Secondary structure						S	S		T	T							T	T	S	.	.	.							T	T		S	S			S					T	T	T	T		S				T	T	T	S	S		S		S	S									T	T	S	S							T	T	S
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	S	L	R	Q	I	N	R	K	T	R	E	V	I	G	I	A	F	D	D	P	A	Y	V	T	W	I	A	Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	T	P	D	T	L	F	E	L	D	M	D	T	G	E	R	R	V	L	K	Q	T	E	V	P	G	F	Y	A	A	N	Y	R	S
Query Conservation
Alig confidence																																															.	.	.	.
Template Conservation																																															.	.	.	.
Template Sequence		M	R	L	W	N	S	S	N	G	E	N	T	L	V	N	Y	G	K	V	C	N	N	S	K	K	G	L	K	F	T	V	S	C	G	C	S	S	E	F	V	F	V	P	Y	G	.	.	.	.	S	T	I	A	V	Y	T	V	Y	S	G	E	Q	I	T	M	L	K	G	H	Y	K	T	V	D	C	C	V	F	Q	S
Template Known Secondary structure							T	T	T			B													S	S									S	S	S	S								T	.	.	.	.	T							T	T	T											S	S									T
Template Predicted Secondary structure																																															.	.	.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.					.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
				417	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	E	H	L	W	I	V	A	R	D	G	V
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		N	F	Q	E	L	Y	S	G	S	R	D	C	N
Template Known Secondary structure		T	T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions