Job Description P24555 Confidence 97.35% Date Thu Jan 5 11:41:42 GMT 2012 Rank 288 Aligned Residues 297 % Identity 12% Template c3vh0C_ PDB info PDB header:protein binding/dna Chain: C: PDB Molecule:uncharacterized protein ynce; PDBTitle: crystal structure of e. coli ynce complexed with dna Resolution 2.90 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																					.	.																					.
Query SS confidence																					.	.																					.
Query Sequence		M	G	G	M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	.	.	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	.	E	L	L	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T	L	L	P	Y	Q	V	W	R	H	A
Query Conservation																					.	.																					.
Alig confidence																					.	.																					.																												.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.
Template Sequence		A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	.	.	.	.	.	A	V	T	A	I	D
Template Known Secondary structure									T	T	T	T										T	T	T		S	S								T	T	T										S	S									T	T	T	T							G	G	G	T	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.						.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.							.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.
Query Sequence		I	G	T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	.	.	.	.	.	.	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H	E	Y	S	L	D	H	Y	Q
Query Conservation																		.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.																								.
Template Conservation																																															.
Template Sequence		A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	.	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G
Template Known Secondary structure		T	T	T									S							S	S													T	T	T	T								S	S	.	S								T	T	T	T											T	T								T	T	T
Template Predicted Secondary structure																																															.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	F	Y	L	R	S	N	R	H	G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	L	T	S	L	R	Q	I	N	R	K	T	R	E	V	I	G	I	A	F	D	D	P	A
Query Conservation
Alig confidence													.	.
Template Conservation													.	.
Template Sequence		K	R	L	Y	T	T	N	A	D	G	E	.	.	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	S
Template Known Secondary structure		T							T	T	S	B	.	.						T	T	T	T							B				S	S	S											G	G	G	T							T	T	S	S							T	T	T										S
Template Predicted Secondary structure													.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	T	W	I	A	Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	T	P	D	T	L	F	E	L	D	M	D	T	G	E	R	R	V	L	K	Q	T	E	V	P	G	F	Y	A	A	N	Y	R	S	E	H	L	W	I	V	A	R	D	G	V	E	V	P	V	S	L	V	Y	H	R	K	H
Query Conservation
Alig confidence								.	.	.	.																.	.	.																											.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.																.	.	.																											.	.	.	.	.	.	.	.	.
Template Sequence		L	A	V	L	F	N	.	.	.	.	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	.	.	.	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	T	H	P	N	S	L	A	L	.	.	.	.	.	.	.	.	.	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K
Template Known Secondary structure								.	.	.	.	G	G	G	T							T	T	T	T		.	.	.						T	T	T	T										S								.	.	.	.	.	.	.	.	.		T	T	S	S												S
Template Predicted Secondary structure								.	.	.	.																.	.	.																											.	.	.	.	.	.	.	.	.
Template SS confidence
		275	.	.	.	.	280					.	.	.	.	.	.	.	.	.	290	.	.	.	.	.				.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.										.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	K	G	H	N	P	L	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Q	E	A	T	Q	P	D	D	V
Template Known Secondary structure		S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions