Job Description P24555 Confidence 88.95% Date Thu Jan 5 11:41:42 GMT 2012 Rank 368 Aligned Residues 239 % Identity 9% Template c3soqA_ PDB info PDB header:protein binding/antagonist Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: the structure of the first ywtd beta propeller domain of lrp6 in2 complex with a dkk1 peptide Resolution 1.90 Å

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		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.				.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence		R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	.	.	.	Y	P	E	L	L	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T	L	L	P	Y	Q	V	W	R	H	A	I	G	T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V
Query Conservation																		.	.	.
Alig confidence																		.	.	.																														.	.	.	.	.
Template Conservation																																																		.	.	.	.	.
Template Sequence		A	N	R	R	D	L	R	L	V	D	A	T	N	G	K	E	N	A	T	I	V	V	G	G	L	E	D	A	A	A	V	D	F	V	F	S	H	G	L	I	Y	W	S	D	V	S	E	E	.	.	.	.	.	A	I	K	R	T	E	F	N	K	T	E	S	V	Q	N	V	V	V	S	G	L	L	S	P	D	G	L
Template Known Secondary structure												G	G	G	T	T	S																			G	G	G	T							T	T	T	T	.	.	.	.	.							T	T	S	T	T											S
Template Predicted Secondary structure																																																		.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.						.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H	E	Y	S	L	D	H	Y	Q	H	R	F	Y	L	R	S	N	R	H	G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W
Query Conservation
Alig confidence										.	.	.	.																																																					.	.
Template Conservation										.	.	.	.																																																					.	.
Template Sequence		A	C	D	W	L	G	E	K	.	.	.	.	L	Y	W	T	D	S	E	T	N	R	I	E	V	S	N	L	D	G	S	L	R	K	V	L	F	W	Q	E	L	D	Q	P	R	A	I	A	L	D	P	S	S	G	F	M	Y	W	T	D	W	G	E	V	.	.	P	K	I	E	R	A	G	M	D	G	S	S	R	F
Template Known Secondary structure					T	T	T	T		.	.	.	.						T	T	T	T							T	T	S		S							S	S		S	S								T	T	T	T								S	S	S	.	.								T	T	S		S
Template Predicted Secondary structure										.	.	.	.																																																					.	.
Template SS confidence
		101	.	.	.	.	.	.	.					.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	L	I	P	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	L	T	S	L	R	Q	I	N	R	K	T	R	E	V	I	G	I	A	F	D	D	P	A	Y	V	T	W	I	A	Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	T	P	D
Query Conservation
Alig confidence																																	.	.																													.	.	.	.												.	.	.
Template Conservation																																	.	.																													.	.	.	.												.	.	.
Template Sequence		I	I	I	N	S	E	I	Y	W	P	N	G	L	T	L	D	Y	E	E	Q	K	L	Y	W	A	D	A	K	L	N	F	.	.	I	H	K	S	N	L	D	G	T	N	R	Q	A	V	V	K	G	S	L	P	H	P	F	A	L	T	L	F	.	.	.	.	E	D	I	L	Y	W	T	D	W	S	T	.	.	.	H
Template Known Secondary structure						S	S		S									T	T	T	T							T	T	T	T		.	.						T	T	S		S							S			S									.	.	.	.	T	T							T	T	T	.	.	.	T
Template Predicted Secondary structure																																	.	.																													.	.	.	.												.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.					.	.	.	.	.	.	240	.	.	.	.				.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	F	E	L	D	M	D	T	G	E	R	R	V	L	K	Q	T	E	V	P	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	L	A	C	N	K	Y	T	G	E	G	L	R	E	I	H	S	D	I	F	S
Template Known Secondary structure								T	T	T			S									S	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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