Phyre 2 alignment of P24555 with c3pe7A

Job Description P24555
Confidence 99.27% Date Thu Jan 5 11:41:42 GMT 2012

Rank 119 Aligned Residues 217

% Identity 11% Template c3pe7A_

PDB info PDB header:lyase Chain: A: PDB Molecule:oligogalacturonate lyase; PDBTitle: oligogalacturonate lyase in complex with manganese

Resolution 1.65 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																							.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	E	L	L	.	.	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																							.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.																	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.
Template Sequence	C	F	T	R	D	G	S	K	L	L	F	G	G	A	F	D	G	P	W	N	.	.	Y	Y	L	L	D	L	N	T	Q	V	A	T	Q	L	T	E	G	R	G	D	N	T	F	G	G	F	L	S	P	D	D	D	A	L	F	Y	V	K	D	G	R	N	L	M	R	V	D	L	A	T	L	E	E	N	V	V	Y	Q
Template Known Secondary structure		B		T	T	S									T	T	S	S			.	.						T	T	T									S	S		B		S	S	S					T	T	S	S							T	T	T							T	T	T
Template Predicted Secondary structure																					.	.
Template SS confidence
	42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.


Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	V	P	A	E	W	V	G	Y	G	T	W	V	A	N	S	D	C	T	K	L	V	G	I	E	I	R	R	E	D	W	V	P	L	T	D	W	K	K	F	H	E	F	Y	F	T	K	P	C	C	R	L	M	R	V	D	L	K	T	G	E	S	T	V	I	L	Q	E	N	Q	W	L	G	H	P	I	Y	R	P	Y	D
Template Known Secondary structure			T	T											T	T	S	S									G	G	G						S								G	G	G											T	T	T										S	S									T	T
Template Predicted Secondary structure
Template SS confidence
	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.

									193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	P	V	T	L	L	P	Y	Q	V	W	R	H	A	I	G	T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F
Query Conservation	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	S	T	V	A	F	C	H	E	G	P	H	D	L	V	D	A	R	M	W	L	I	N	E	D	G	T	N	M	R	K	V	K	T	H	A	E	G	E	S	C	T	H	E	F	W	V	P	D	G	S	A	L	V	Y	V	S	Y	L	K	G	S	P	D	R	F	I	Y	S	A	D	P	E	T	L	E	N	R	Q	L
Template Known Secondary structure										S		T	T	T	S	S		S						T	T	S						S					T	T										T	T	S	S									T	T											T	T	T
Template Predicted Secondary structure
Template SS confidence
	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

	265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.											320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence	L	P	R	R	K	D	H	E	Y	S	L	D	H	Y	Q	H	R	F	Y	L	R	S	N	R	H	G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	.	.	.	.	.	.	.	.	.	.	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	T	S	M	P	A	C	S	H	L	M	S	N	Y	D	G	S	L	M	V	G	D	G	S	D	A	E	N	D	P	F	L	Y	V	F	N	M	K	N	G	T	Q	H	R	V	A	R	H	D	T	S	W	K	V	F	E	G	D	R	Q	V	T	H	P	H	P	S	F	T	P	D	D	K	Q	I	L	F	T	S	D	V
Template Known Secondary structure													T	T	S	S																				T	T	T	T															B	T	T	B	S	S	T	T								T	T	S	S								T
Template Predicted Secondary structure
Template SS confidence
	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

	335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	G	L	T	S	L	R	Q	I	N	R	K	T	R	E	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence	H	G	K	P	A	L	Y	L	A	T	L	P	E	S	V	W	K
Template Known Secondary structure	T	S	S										G	G	G	G
Template Predicted Secondary structure
Template SS confidence
	372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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