Job Description P24555 Confidence 96.38% Date Thu Jan 5 11:41:42 GMT 2012 Rank 315 Aligned Residues 79 % Identity 16% Template c3mmyE_ PDB info PDB header:nuclear protein Chain: E: PDB Molecule:mrna export factor; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 Resolution 1.65 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.									.	.	.	.
Predicted Secondary structure																																									.	.																												.	.	.	.	.	.	.	.
Query SS confidence																																									.	.																												.	.	.	.	.	.	.	.
Query Sequence		M	G	G	M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	.	.	E	L	L	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	.	.	.	.	.	.	.	.	T	L	L	P
Query Conservation																																									.	.																												.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.														.	.																												.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.
Template Sequence		V	N	G	I	A	F	H	P	V	H	G	T	L	A	T	V	G	S	D	G	R	.	.	.	.	.	F	S	F	W	D	K	D	A	R	T	K	L	K	T	S	E	Q	L	D	Q	P	I	S	A	C	C	F	N	H	N	G	N	I	F	A	Y	A	S	S	Y	D	W	S	K	G	H	E	F	Y	N	P	Q	K	K
Template Known Secondary structure									T	T	T								T	T	S		.	.	.	.	.						T	T	T	T										S	S									T	T	S	S										S	T	T		G	G	G			T	T	S
Template Predicted Secondary structure																							.	.	.	.	.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.						.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		199	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	V	W	R	H	A	I	G	T	P	A	S	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	Y	I	F	L	R	N	A	A	E	E	L	K	P
Template Known Secondary structure										T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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