Job Description P24555 Confidence 97.82% Date Thu Jan 5 11:41:42 GMT 2012 Rank 274 Aligned Residues 251 % Identity 11% Template c3mkqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat Resolution 2.50 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		M	G	G	M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	.	.	E	L	L	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T	L	L	P	Y	Q	V	W	R	H	A	I
Query Conservation																																									.	.
Alig confidence																						.	.	.	.	.															.	.																												.	.	.	.	.	.
Template Conservation																						.	.	.	.	.																																												.	.	.	.	.	.
Template Sequence		V	K	G	I	D	F	H	P	T	E	P	W	V	L	T	T	L	Y	S	G	.	.	.	.	.	R	V	E	I	W	N	Y	E	T	Q	V	E	V	R	S	I	Q	V	T	E	T	P	V	R	A	G	K	F	I	A	R	K	N	W	I	I	V	G	S	D	D	F	R	.	.	.	.	.	.	I	R	V	F	N	Y
Template Known Secondary structure									S	S	S	S							T	T	S	.	.	.	.	.							T	T	T	T										S	S									G	G	G	T							T	T	S		.	.	.	.	.	.						T
Template Predicted Secondary structure																						.	.	.	.	.																																												.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.						.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.							.	80	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		G	T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H	E	.	Y	S	L	D	H	Y	Q	H	R	F	Y	L	R
Query Conservation																																																																				.
Alig confidence											.	.	.																												.	.	.																									.
Template Conservation											.	.	.																												.	.	.
Template Sequence		N	T	G	E	K	V	V	D	F	.	.	.	E	A	H	P	D	Y	I	R	S	I	A	V	H	P	T	K	P	Y	V	L	S	G	S	D	D	L	T	.	.	.	V	K	L	W	N	W	E	N	N	W	A	L	E	Q	T	F	E	G	H	E	H	F	V	M	C	V	A	F	N	P	K	D	P	S	T	F	A	S
Template Known Secondary structure		T	T								.	.	.				S	S									S	S	S	S							T	T	S		.	.	.						G	G	G	T	S										S	S									T	T
Template Predicted Secondary structure											.	.	.																												.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	R	H	G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	L	T	S	L	R	Q	I	N	R	K	T	R	E	V	I	G	I	A	F	D	D	P	A	Y	V	T	W	I	A
Query Conservation
Alig confidence							.	.	.
Template Conservation							.	.	.
Template Sequence		G	C	L	D	R	.	.	.	T	V	K	V	W	S	L	G	Q	S	T	P	N	F	T	L	T	T	G	Q	E	R	G	V	N	Y	V	D	Y	Y	P	L	P	D	K	P	Y	M	I	T	A	S	D	D	L	T	I	K	I	W	D	Y	Q	T	K	S	C	V	A	T	L	E	G	H	M	S	N	V	S	F	A	V
Template Known Secondary structure				T	T	S	.	.	.							T	T		S	S		S								T	T										S	T	T									T	T	S							T	T	T	T										S	S
Template Predicted Secondary structure							.	.	.
Template SS confidence
		159	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	T	P	D	T	L	F	E	L	D	M	D	T	G	E	R	R	V	L	K	Q	T	E
Query Conservation
Alig confidence				.	.													.	.	.	.
Template Conservation				.	.													.	.	.	.
Template Sequence		F	H	.	.	P	T	L	P	I	I	I	S	G	S	E	D	.	.	.	.	G	T	L	K	I	W	N	S	S	T	Y	K	V	E	K	T	L	N	V	G
Template Known Secondary structure				.	.	S	S	S	S							T	T	.	.	.	.	S							T	T	T		S								S
Template Predicted Secondary structure				.	.													.	.	.	.
Template SS confidence
		236	.			.	.	240	.	.	.	.	.	.	.	.	.					250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions