Job Description P24555 Confidence 97.57% Date Thu Jan 5 11:41:42 GMT 2012 Rank 280 Aligned Residues 219 % Identity 10% Template c3iytG_ PDB info PDB header:apoptosis Chain: G: PDB Molecule:apoptotic protease-activating factor 1; PDBTitle: structure of an apoptosome-procaspase-9 card complex Resolution 9.50 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		M	G	G	M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	.	.	E	L	L	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T	L	L	P	Y	Q	V	W	R	H	A	I
Query Conservation																																									.	.
Alig confidence																						.	.	.	.	.															.	.																												.	.	.	.	.	.
Template Conservation																						.	.	.	.	.																																												.	.	.	.	.	.
Template Sequence		V	Y	H	A	C	F	S	E	D	G	Q	R	I	A	S	C	G	A	D	K	.	.	.	.	.	T	L	Q	V	F	K	A	E	T	G	E	K	L	L	E	I	K	A	H	E	D	E	V	L	C	C	A	F	S	T	D	D	R	F	I	A	T	C	S	V	D	K	K	.	.	.	.	.	.	V	K	I	W	N	S
Template Known Secondary structure									S	S	S	S							T	T	S	.	.	.	.	.							T	T	T											S	S									S	S	S	S							T	T			.	.	.	.	.	.						T
Template Predicted Secondary structure																						.	.	.	.	.																																												.	.	.	.	.	.
Template SS confidence
		618	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.						.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680							.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H	E	Y	S	L	D	H	Y	Q	H	R	F	Y	L	R	S
Query Conservation
Alig confidence		.	.	.																																							.
Template Conservation		.	.	.																																							.
Template Sequence		.	.	.	M	T	G	E	L	V	H	T	Y	D	E	H	S	E	Q	V	N	C	C	H	F	T	N	S	S	H	H	L	L	L	A	T	G	S	S	D	C	F	.	L	K	L	W	D	L	N	Q	K	E	C	R	N	T	M	F	G	H	T	N	S	V	N	H	C	R	F	S	P	D	D	K	L	L	A	S	C	S
Template Known Secondary structure		.	.	.	T	S	S										S	S									S	S	S	S	S	S							T	T	S		.						T	T	T											S	S									S	S	S
Template Predicted Secondary structure		.	.	.																																							.
Template SS confidence
					687	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.		.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320						.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																																				.	.	.	.	.
Query SS confidence																																				.	.	.	.	.
Query Sequence		N	R	H	G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	.	.	.	.	.	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	L	T	S	L	R	Q	I	N	R	K	T	R	E	V	I	G	I	A	F	D	D	P	A	Y	V
Query Conservation																																				.	.	.	.	.
Alig confidence			.	.	.	.																														.	.	.	.	.
Template Conservation			.	.	.	.
Template Sequence		A	.	.	.	.	D	G	T	L	K	L	W	D	A	T	S	A	N	E	R	K	S	I	N	V	K	Q	F	F	L	N	L	E	D	P	Q	E	R	I	M	V	A	A	K	N	K	I	F	L	F	D	I	H	T	S	G	L	L	G	E	I	H	T	G	H	H	S	T	I	Q	Y	C	D	F	S	P	Q	N	H	L
Template Known Secondary structure		T	.	.	.	.	T	S							S	S	S											S	S																S	S							S	S	S	T	T										S	S									S	S	S	S
Template Predicted Secondary structure			.	.	.	.
Template SS confidence
		763					.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.
		362	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	W	I	A	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	V	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		855	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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