Job Description P24555 Confidence 97.76% Date Thu Jan 5 11:41:42 GMT 2012 Rank 275 Aligned Residues 267 % Identity 10% Template c3hfqB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein lp_2219; PDBTitle: crystal structure of the lp_2219 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr118. Resolution 1.96 Å

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		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		G	G	M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	.	.	E	L	L	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T	L	L	P	Y	Q	V	W	R	H	A	I	G
Query Conservation																																								.	.
Alig confidence																			.																					.	.																												.	.	.	.	.
Template Conservation																			.																																																		.	.	.	.	.
Template Sequence		T	Y	L	A	L	S	A	K	D	C	L	Y	S	V	D	K	E	.	D	D	E	G	G	I	A	A	W	Q	I	D	G	Q	T	A	H	K	L	N	T	V	V	A	P	G	T	P	P	A	Y	V	A	V	D	E	A	R	Q	L	V	Y	S	A	N	Y	H	K	G	.	.	.	.	.	T	A	E	V	X	K	I	A
Template Known Secondary structure								T	T										.	T	T											T	T												S				S						T	T	T	T							T	T	T	T	.	.	.	.	.
Template Predicted Secondary structure																			.																																																		.	.	.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.						.	110	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.										.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.
Query Sequence		T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	.	.	.	.	.	.	.	.	.	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H	E	Y	S	L	D	H	Y
Query Conservation																			.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	G	A	L	T	L	T	D	T	V	Q	H	S	G	H	G	P	R	P	E	Q	D	G	S	H	I	H	Y	T	D	L	T	P	D	N	R	L	A	V	I	D	L	G	S	D	K	V	Y	V	Y	N	V	S	D	A	G	Q	L	S	E	Q	S	V	L	T	X	E	A	G	F	G	P	R	H	L	V	F	S	P
Template Known Secondary structure		T	T	S															S	S	T	T		S	S										T	T	S							T	T	T	T									T	T	S												T	T										T
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.							.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.
Predicted Secondary structure																																			.	.	.	.	.	.																																					.
Query SS confidence																																			.	.	.	.	.	.																																					.
Query Sequence		Q	H	R	F	Y	L	R	S	N	R	H	G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	.	.	.	.	.	.	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	L	T	S	L	R	Q	I	N	R	K	T	.	R	E	V	I
Query Conservation																																			.	.	.	.	.	.																																					.
Alig confidence																																			.	.	.	.	.	.																																					.
Template Conservation
Template Sequence		D	G	Q	Y	A	F	L	A	G	E	L	S	S	Q	I	A	S	L	K	Y	D	T	Q	T	G	A	F	T	Q	L	G	I	V	K	T	I	P	A	D	Y	T	A	H	N	G	A	A	A	I	R	L	S	H	D	G	H	F	L	Y	V	S	N	R	G	Y	N	T	L	A	V	F	A	V	T	A	D	G	H	L	T
Template Known Secondary structure		T	S	S							T	T	T	T									T	T	T	T										S	S		T	T			S											T	T	S									T	T	T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	A	F	D	D	P	A	Y	V	T	W	I	A	Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	T	P	D	T	L	F	E	L	D	M	D	T	G	E	R	R	V	L	K	Q
Query Conservation
Alig confidence																																				.
Template Conservation																																				.
Template Sequence		L	I	Q	Q	I	S	T	E	G	D	F	P	R	D	F	D	L	D	P	T	E	A	F	V	V	V	V	N	Q	N	T	D	N	A	.	T	L	Y	A	R	D	L	T	S	G	K	L	S	L	L	Q	K
Template Known Secondary structure									S	S	S									T	T	S	S							T	T	T	T			.							T	T	T
Template Predicted Secondary structure																																				.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions