Job Description P24555 Confidence 40.01% Date Thu Jan 5 11:41:42 GMT 2012 Rank 416 Aligned Residues 245 % Identity 6% Template c3eweC_ PDB info PDB header:protein transport,structural protein Chain: C: PDB Molecule:nucleoporin seh1; PDBTitle: crystal structure of the nup85/seh1 complex Resolution 3.50 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170							.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																												.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.
Query Sequence		M	G	G	M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	E	L	L	.	.	.	.	.	.	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T	L	L	P	Y	Q	V	W
Query Conservation																																												.	.	.	.	.	.
Alig confidence																						.	.	.	.	.																		.	.	.	.	.	.																																.
Template Conservation																						.	.	.	.	.																																																							.
Template Sequence		V	H	D	V	V	Y	D	F	Y	G	R	H	V	A	T	C	S	S	D	Q	.	.	.	.	.	H	I	K	V	F	K	L	D	K	D	T	S	N	W	E	L	S	D	S	W	R	A	H	D	S	S	I	V	A	I	D	W	A	S	P	E	Y	G	R	I	I	A	S	A	S	Y	D	K	T	V	K	L	W	E	.
Template Known Secondary structure					B				S	S	S	S							S	S	S	.	.	.	.	.									T	T	T													S	S										T	T	T									S	S	S							.
Template Predicted Secondary structure																						.	.	.	.	.																																																							.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.						.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	A	I	G	T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H	E	Y	S	L	D	H	Y	Q	H	R	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	E	W	N	K	L	C	T	L	N	D	S	K	G	S	L	Y	S	V	K	F	A	P	A	H	L	G	L	K	L	A	C	L	G	N	D	G	I	L	R	L	Y	D	A	L	E	P	S	D	L	R	S	W	T	L	T	S	E	M	K	V	S	D	F	C	L	S	W	C	P	S	P	E	K
Template Known Secondary structure		.	.	.	.	.	.	.												S	S										T	T	T		S	B						T	T				B							T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	R	S	N	R	H	G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	L	T	S	L	R	Q	I	N	R	K	T	R	E	V	I	G	I	A	F	D	D	P	A	Y	V	T
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.
Template Sequence		L	A	V	S	A	L	E	Q	A	I	I	.	.	.	.	.	.	.	.	Y	Q	R	L	H	V	A	A	K	L	P	G	H	K	S	L	I	R	S	I	S	W	A	P	S	Y	Q	L	I	A	T	G	C	K	D	G	R	I	R	I	F	K	I	T	E	N	L	Q	V	E	L	L	S	G	E	.	.	.	.	.	.
Template Known Secondary structure							S	S					.	.	.	.	.	.	.	.														S	S																			T	T	S													B			B				.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.									.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	I	A	Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	T	P	D	T	L	F	E	L	D	M	D	T	G	E	R	R	V	L	K	Q	T
Query Conservation
Alig confidence																					.	.	.	.
Template Conservation																					.	.	.	.
Template Sequence		V	W	S	V	S	W	N	L	T	G	T	I	L	S	S	A	G	D	D	.	.	.	.	G	K	V	R	L	W	K	A	T	Y	S	N	E	F	K	C	M	S	V
Template Known Secondary structure									S	S	S								T	T	.	.	.	.	S									T	T	S
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.					.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions