Job Description P24555 Confidence 94.69% Date Thu Jan 5 11:41:42 GMT 2012 Rank 342 Aligned Residues 252 % Identity 12% Template c3ei4D_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-hsddb2 complex Resolution 3.30 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																												.	.	.	.
Query SS confidence																																												.	.	.	.
Query Sequence		M	G	G	M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	E	L	L	.	.	.	.	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T	L	L	P	Y	Q	V	W	R	H
Query Conservation																																												.	.	.	.
Alig confidence																								.	.	.	.																	.	.	.	.																									.	.	.	.	.
Template Conservation																								.	.	.	.																																													.	.	.	.	.
Template Sequence		A	T	S	L	A	W	H	P	T	H	P	S	T	V	A	V	G	S	K	G	G	D	.	.	.	.	I	M	L	W	N	F	G	I	K	D	K	P	T	F	I	K	G	I	G	A	G	G	S	I	T	G	L	K	F	N	P	L	N	T	N	Q	F	Y	A	S	S	M	E	G	.	.	.	.	.	T	T	R	L	Q
Template Known Secondary structure									S	S		S	S							S	S	S		.	.	.	.						S	S	S		S									S	S	S								B		T	T		T	T							T	T	S	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.																																													.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.					.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.						180	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	G	T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H	E	Y	S	L	D	H	Y	Q	H	R	F	Y	L
Query Conservation
Alig confidence						.																																				.	.	.	.
Template Conservation						.																																				.	.	.	.
Template Sequence		D	F	K	G	.	N	I	L	R	V	F	A	S	S	D	T	I	N	I	W	F	C	S	L	D	V	S	A	S	S	R	M	V	V	T	G	D	N	V	G	.	.	.	.	N	V	I	L	L	N	M	D	G	K	E	L	W	N	L	R	M	H	K	K	K	V	T	H	V	A	L	N	P	C	C	D	W	F	L	A
Template Known Secondary structure			T	T	T	.										S	S	T	T										T	T	T	T							S	S	S	.	.	.	.							T	T			B							S	S	S									T	T	S	T	T
Template Predicted Secondary structure						.																																				.	.	.	.
Template SS confidence
		185	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.					.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		R	S	N	R	H	G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	L	T	S	L	R	Q	I	N	R	K	T	R	E	V	I	G	I	A	F	D	D	P	A	Y	V	T	.	.
Query Conservation																																																																																.	.
Alig confidence																																																					.	.	.																									.	.
Template Conservation																																																					.	.	.
Template Sequence		T	A	S	V	D	Q	T	V	K	I	W	D	L	R	Q	V	R	G	K	A	S	F	L	Y	S	L	P	H	R	H	P	V	N	A	A	C	F	S	P	D	G	A	R	L	L	T	T	D	Q	K	S	.	.	.	E	I	R	V	Y	S	A	S	Q	W	D	C	P	L	G	L	I	P	H	P	H	R	H	F	Q	H
Template Known Secondary structure					T	T	S							T	T	T			S	S	S			S						S	S									T	T	S	S							S	S	S	.	.	.							T	T		S	S	S		S											T	T
Template Predicted Secondary structure																																																					.	.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310				.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
				363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.									.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																						.	.	.	.	.	.	.	.
Query SS confidence		.	.																						.	.	.	.	.	.	.	.
Query Sequence		.	.	W	I	A	Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	.	.	.	.	.	.	.	.	T	P	D	T	L	F	E	L	D	M	D	T	G	E
Query Conservation		.	.																						.	.	.	.	.	.	.	.
Alig confidence		.	.																						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	P	I	K	A	A	W	H	P	R	Y	N	L	I	V	V	G	R	Y	P	D	P	N	F	K	S	C	T	P	Y	E	L	R	T	I	D	V	F	D	G	N	S	G	K
Template Known Secondary structure		S									S	S	S	S										T	T	S			S	S	S				S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions