Job Description P24555 Confidence 90.38% Date Thu Jan 5 11:41:42 GMT 2012 Rank 365 Aligned Residues 254 % Identity 10% Template c3ei3B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-drddb2 complex Resolution 2.30 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																												.	.	.	.
Query SS confidence																																												.	.	.	.
Query Sequence		M	G	G	M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	E	L	L	.	.	.	.	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T	L	L	P	Y	Q	V	W	R	H
Query Conservation																																												.	.	.	.
Alig confidence																								.	.	.	.																	.	.	.	.																									.	.	.	.	.
Template Conservation																								.	.	.	.																																													.	.	.	.	.
Template Sequence		V	T	S	L	E	W	H	P	T	H	P	T	T	V	A	V	G	S	K	G	G	D	.	.	.	.	I	I	L	W	D	Y	D	V	Q	N	K	T	S	F	I	Q	G	M	G	P	G	D	A	I	T	G	M	K	F	N	Q	F	N	T	N	Q	L	F	V	S	S	I	R	G	.	.	.	.	.	A	T	T	L	R
Template Known Secondary structure									S	S		T	T							B	T	S		.	.	.	.						T	T	S	T	T									S	T	T		B								T	T										T	T	T	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.																																													.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.					.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.						.	.	.	.	220
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	G	T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H	E	Y	S	L	D	H	Y	Q	H	R	F	Y	L
Query Conservation
Alig confidence						.																																				.	.	.	.
Template Conservation						.																																				.	.	.	.
Template Sequence		D	F	S	G	.	S	V	I	Q	V	F	A	K	T	D	S	W	D	Y	W	Y	C	C	V	D	V	S	V	S	R	Q	M	L	A	T	G	D	S	T	G	.	.	.	.	R	L	L	L	L	G	L	D	G	H	E	I	F	K	E	K	L	H	K	A	K	V	T	H	A	E	F	N	P	R	C	D	W	L	M	A
Template Known Secondary structure			T	T	S	.												S	S										T	T	T	T							T	T	S	.	.	.	.							T	T	S									S	S	S									S	S		T	T
Template Predicted Secondary structure						.																																				.	.	.	.
Template SS confidence
		221	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.					260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		R	S	N	R	H	G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	L	T	S	L	R	Q	I	N	R	K	T	R	E	V	I	G	I	A	F	D	D	P	A	Y	V	T	.	.
Query Conservation																																																																																.	.
Alig confidence																																																							.	.																								.	.
Template Conservation																																																							.	.
Template Sequence		T	S	S	V	D	A	T	V	K	L	W	D	L	R	N	I	K	D	K	N	S	Y	I	A	E	M	P	H	E	K	P	V	N	A	A	Y	F	N	P	T	D	S	T	K	L	L	T	T	D	Q	R	N	E	.	.	I	R	V	Y	S	S	Y	D	W	S	K	P	D	Q	I	I	I	H	P	H	R	Q	F	Q	H
Template Known Secondary structure					T	T	S							G	G	G			S	T	T									S	S									T	T	T	S								S	S	S		.	.						T	T	B	T	T	S		S							B				T	T
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
				363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.						.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																						.	.	.	.	.
Query SS confidence		.	.																						.	.	.	.	.
Query Sequence		.	.	W	I	A	Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	.	.	.	.	.	T	P	D	T	L	F	E	L	D	M	D	T	G	E	R
Query Conservation		.	.																						.	.	.	.	.
Alig confidence		.	.																						.	.	.	.	.
Template Conservation
Template Sequence		L	T	P	I	K	A	T	W	H	P	M	Y	D	L	I	V	A	G	R	Y	P	D	D	Q	L	L	L	N	D	K	R	T	I	D	I	Y	D	A	N	S	G	G	L
Template Known Secondary structure		S									S	S	S	S							B			T	T	T		T	T										T	T	T
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions