Job Description P24555 Confidence 96.83% Date Thu Jan 5 11:41:42 GMT 2012 Rank 305 Aligned Residues 209 % Identity 15% Template c3ds8A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2722 protein; PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.				.	.	.	480	.	.	.	.	.	.										.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure																															.	.	.											.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.											.	.	.	.	.	.	.	.	.
Query Sequence		L	V	Y	G	Y	G	S	Y	G	A	S	I	D	A	D	F	S	F	S	R	L	S	L	L	D	R	G	F	V	.	.	.	Y	A	I	V	H	V	R	G	G	G	.	.	.	.	.	.	.	.	.	E	L	G	Q	Q	W	Y	E	D	G	K	F	L	K	K	K	N	T	F	N	D	Y	L	D	A	C	D	A	L
Query Conservation																															.	.	.											.	.	.	.	.	.	.	.	.
Alig confidence														.	.																.	.	.											.	.	.	.	.	.	.	.	.
Template Conservation														.	.
Template Sequence		I	I	L	I	H	G	S	G	G	N	A	S	.	.	S	L	D	K	X	A	D	Q	L	X	N	E	Y	R	S	S	N	E	A	L	T	X	T	V	N	S	E	G	K	I	K	F	E	G	K	L	T	K	D	A	K	R	P	I	I	K	F	G	F	E	Q	N	Q	A	T	P	D	D	W	S	K	W	L	K	I	A
Template Known Secondary structure								T	T			T	T	.	.	T	T										T	T													T	T	T						S				T	T		S	S								S	S	T	T	S
Template Predicted Secondary structure														.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.			.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		516	.	.						.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.						.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.																															.	.	.	.	.
Query SS confidence					.	.	.	.	.																															.	.	.	.	.
Query Sequence		L	K	L	.	.	.	.	.	G	Y	G	S	P	S	L	C	Y	A	M	G	G	S	A	G	G	M	L	M	G	V	A	I	N	Q	R	P	E	L	.	.	.	.	.	F	H	G	V	I	A	Q	V	P	F	V	D	V	V	T	T	M	L	D	E	S	I	P	L	T	T	G	E	F	E	E	W	G	N	P	Q	D
Query Conservation					.	.	.	.	.																															.	.	.	.	.
Alig confidence					.	.	.	.	.			.	.	.																										.	.	.	.	.																										.	.	.	.	.	.
Template Conservation												.	.	.																																																								.	.	.	.	.	.
Template Sequence		X	E	D	L	K	S	R	Y	G	F	.	.	.	T	Q	X	D	G	V	G	H	S	N	G	G	L	A	L	T	Y	Y	A	E	D	Y	A	G	D	K	T	V	P	T	L	R	K	L	V	A	I	G	S	P	F	N	D	L	D	P	N	D	N	G	X	D	L	S	F	.	.	.	.	.	.	K	K	L	P	N	S
Template Known Secondary structure												.	.	.	S								T													S	T	T		T	T	S										S			T	T		S							S		T	T		.	.	.	.	.	.	S	S		S	S
Template Predicted Secondary structure												.	.	.																																																								.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.							.	150	.	.	.	.
		586	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.						.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660
Predicted Secondary structure																																.	.	.	.	.
Query SS confidence																																.	.	.	.	.
Query Sequence		P	Q	Y	Y	E	Y	M	K	S	Y	S	P	Y	D	N	V	T	A	Q	A	Y	P	H	L	L	V	T	T	G	L	.	.	.	.	.	H	D	S	Q	V	Q	Y	W	E	P	A	K	W	V	A	K	L	R	E	L	K	T	D	D	H	L	L	L	L	C	T	D	M	D	S	G	H	G	G	K	S	G	R	F	K
Query Conservation																																.	.	.	.	.
Alig confidence																				.	.	.	.									.	.	.	.	.
Template Conservation																				.	.	.	.
Template Sequence		T	P	Q	X	D	Y	F	I	K	N	Q	T	E	V	S	P	D	L	.	.	.	.	E	V	L	A	I	A	G	E	L	S	E	D	N	P	T	D	G	I	V	P	T	I	S	S	L	A	T	R	L	F	X	P	G	S	A	K	A	Y	I	E	D	I	Q	V	G	E	D	A	V	H	Q	T	L	H	E	T	P	K
Template Known Secondary structure											T	G	G	G	S		T	T		.	.	.	.									S	B	T	T	B		B		S	S	S	B					T	G	G	G	G	T	S	B	T	T	B	S									S	G	G	G		G	G	G	G	G	G	S
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.					.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		661	.	.	.	.	.	.	.	.	670	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	E	G	V	A	M	E	Y	A	F	L	V	A
Query Conservation
Alig confidence							.	.	.
Template Conservation							.	.	.
Template Sequence		S	I	E	K	T	.	.	.	Y	W	F	L	E	K
Template Known Secondary structure							.	.	.						T
Template Predicted Secondary structure							.	.	.
Template SS confidence
		231	.	.	.	.				.	.	.	.	240	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions