Job Description P24555 Confidence 99.71% Date Thu Jan 5 11:41:42 GMT 2012 Rank 56 Aligned Residues 252 % Identity 13% Template c3d0kA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative poly(3-hydroxybutyrate) depolymerase lpqc; PDBTitle: crystal structure of the lpqc, poly(3-hydroxybutyrate) depolymerase2 from bordetella parapertussis Resolution 1.83 Å

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		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	Q	T	E	V	P	G	F	Y	A	A	N	Y	R	S	E	H	L	W	I	V	A	R	D	G	V	E	V	P	V	S	L	V	Y	H	R	K	H	F	R	K	G	H	N	P	L	L	V	Y	G	Y	G	S	Y	G	A	S	I	D	A	D	F	S	F	S	R	L	S	L	L	D	R	G	F	V	Y	A	I	V
Query Conservation
Alig confidence																																													.	.																	.
Template Conservation																																													.	.																	.
Template Sequence		L	T	N	A	D	R	I	A	L	E	L	G	H	A	G	R	N	A	I	P	Y	L	D	N	A	D	R	P	F	T	L	N	T	Y	R	P	Y	G	Y	T	P	D	R	.	.	P	V	V	V	V	Q	H	G	V	L	R	N	G	A	D	Y	.	R	D	F	W	I	P	A	A	D	R	H	K	L	L	I	V	A	P
Template Known Secondary structure												S	S	S	S											T	T											T	T			T	T	S	.	.									T	T							.				T								T
Template Predicted Secondary structure																																													.	.																	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.									.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.
Query Sequence		H	V	R	G	G	G	E	L	G	Q	Q	W	Y	E	D	G	K	F	L	K	K	K	N	.	.	.	.	.	.	.	.	T	F	N	D	Y	L	D	A	C	D	A	L	L	K	L	G	Y	G	S	P	S	L	C	Y	A	M	G	G	S	A	G	G	M	L	M	G	V	A	I	N	Q	R	P	E	L	F	H	G	V
Query Conservation																									.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	F	S	D	E	I	W	P	G	V	E	S	Y	N	N	G	R	A	F	T	A	A	G	N	P	R	H	V	D	G	W	T	Y	A	L	V	A	R	V	L	A	N	I	R	A	A	E	I	A	D	C	E	Q	V	Y	L	F	G	H	S	A	G	G	Q	F	V	H	R	L	X	S	S	Q	P	H	A	P	F	H	A
Template Known Secondary structure					T	T	T	S						T	T	T	T	T		B		T	T	S		B			G	G	G	S	T	T													T	T	S				S	S							T													S		S	T	T		S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.									.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.			.	.	.	620	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.																							.	.
Query SS confidence																																												.	.	.	.	.	.	.	.																							.	.
Query Sequence		I	A	Q	V	P	F	V	D	V	V	T	T	M	L	D	E	S	I	P	L	T	T	G	E	F	E	E	W	G	N	P	Q	D	P	Q	Y	Y	E	Y	M	K	S	.	.	.	.	.	.	.	.	Y	S	P	Y	D	N	V	T	A	Q	A	Y	P	H	L	L	V	T	T	G	L	H	.	.	D	S	Q	V	Q	Y
Query Conservation																																												.	.	.	.	.	.	.	.																							.	.
Alig confidence																								.	.	.	.	.																.	.	.	.	.	.	.	.														.									.	.
Template Conservation																								.	.	.	.	.																																					.
Template Sequence		V	T	A	A	N	P	G	W	Y	T	L	P	T	F	E	H	R	F	P	E	G	L	.	.	.	.	.	D	G	V	G	L	T	E	D	H	L	A	R	L	L	A	Y	P	X	T	I	L	A	G	D	Q	D	I	A	T	P	N	L	P	S	E	P	.	A	A	L	R	Q	G	P	H	R	Y	A	R	A	R	H	Y
Template Known Secondary structure						S		S	S				S	S	T	T	S	B	T	T	T	S	S	.	.	.	.	.	B	T	T	T												S								T	T							S			S		.				T	T		S	S
Template Predicted Secondary structure																								.	.	.	.	.																																					.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.						.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		623	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	E	P	A	K	W	V	A	K	L	R	E	L	K	T	D	D	H	L	L	L	L	C	T	D	M	D	S	G	H	G	G	K	S	G	R	F	K	S	Y	E	G
Query Conservation
Alig confidence																								.	.	.
Template Conservation																								.	.	.
Template Sequence		Y	E	A	G	Q	R	A	A	A	Q	R	G	L	P	F	G	W	Q	L	Q	V	V	.	.	.	P	G	I	G	H	D	G	Q	A	X	S	Q	V	C	A	S	L
Template Known Secondary structure													T											.	.	.	T	T			S
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.				.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions