Job Description P24555 Confidence 99.08% Date Thu Jan 5 11:41:42 GMT 2012 Rank 144 Aligned Residues 286 % Identity 11% Template c3c5mC_ PDB info PDB header:lyase Chain: C: PDB Molecule:oligogalacturonate lyase; PDBTitle: crystal structure of oligogalacturonate lyase (vpa0088)2 from vibrio parahaemolyticus. northeast structural3 genomics consortium target vpr199 Resolution 2.60 Å

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		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	.	.	Y	P	E	L	L	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T	L	L	P	Y	Q	V	W	R	H	A	I	G	T	P	A
Query Conservation																																			.	.
Alig confidence																						.	.												.	.																														.	.	.	.	.	.									.
Template Conservation																						.	.																																											.	.	.	.	.	.									.
Template Sequence		C	F	T	Q	D	G	K	K	L	L	F	A	G	D	F	D	G	N	R	N	.	.	Y	Y	L	L	N	L	E	T	Q	Q	A	V	Q	L	T	E	G	K	G	D	N	T	F	G	G	F	I	S	T	D	E	R	A	F	F	Y	V	K	N	E	L	N	.	.	.	.	.	.	L	X	K	V	D	L	E	T	.	L
Template Known Secondary structure			B		T	T	S									T	T	S	S			.	.						T	T	T	T								S	S		B		T	T	T					T	T	S	S							T	T	T		.	.	.	.	.	.						T	T	T	.
Template Predicted Secondary structure																						.	.																																											.	.	.	.	.	.									.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.							.	.	.	.	.	.	110	.		.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.																				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation																																																																															.
Template Sequence		E	E	Q	V	I	Y	T	V	D	E	E	W	K	G	Y	G	T	W	V	A	N	S	D	C	T	K	L	V	G	I	E	I	L	K	R	D	W	Q	P	L	T	S	W	E	K	F	A	E	F	Y	H	T	N	P	T	C	R	L	I	K	V	D	I	E	T	G	E	L	E	V	I	H	Q	D	T	A	W	.	L	G
Template Known Secondary structure											T	T											T	T	S	S									G	G	G						S										T											T	T	T										S	S		.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.				.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.																											.
Query SS confidence																						.	.	.																											.
Query Sequence		E	Y	S	L	D	H	Y	Q	H	R	F	Y	L	R	S	N	R	H	G	K	.	.	.	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	.	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	L	T	S	L	R	Q	I	N	R	K	T
Query Conservation																						.	.	.																											.
Alig confidence																						.	.	.																											.
Template Conservation
Template Sequence		H	P	I	Y	R	P	F	D	D	S	T	V	G	F	C	H	E	G	P	H	D	L	V	D	A	R	X	W	L	V	N	E	D	G	S	N	V	R	K	I	K	E	H	A	E	G	E	S	C	T	H	E	F	W	I	P	D	G	S	A	X	A	Y	V	S	Y	F	K	G	Q	T	D	R	V	I	Y	K	A	N	P
Template Known Secondary structure							T	T											S		S	S	S		S								T	T	S						S	S				T	T										T	T	S	S									T	T	T										T
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.				.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure																																																														.	.	.
Query SS confidence																																																														.	.	.
Query Sequence		R	E	V	I	G	I	A	F	D	D	P	A	Y	V	T	W	I	A	Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	T	P	D	T	L	F	E	L	D	M	D	T	G	E	R	R	V	L	K	Q	T	E	V	P	.	.	.	G	F	Y	A	A	N	Y	R	S	E	H	L	W	I	V	A	R
Query Conservation																																																														.	.	.
Alig confidence																																																														.	.	.															.
Template Conservation																																																																															.
Template Sequence		E	T	L	E	N	E	E	V	X	V	X	P	P	C	S	H	L	X	S	N	F	D	G	S	L	X	V	G	D	G	C	D	A	N	I	E	N	D	P	F	L	Y	V	L	N	T	K	A	K	S	A	Q	K	L	C	K	H	S	T	S	W	D	V	L	D	G	D	R	Q	I	T	H	P	H	P	S	F	.	T	P
Template Known Secondary structure		T	T											S								S	S	S	S																						T	T	T	T	B														B	T	T	B	S	S	T	T							.		T
Template Predicted Secondary structure																																																																															.
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350
		425	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	V	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	D	D	G	V
Template Known Secondary structure		T	S	S
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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