Job Description P24555 Confidence 98.29% Date Thu Jan 5 11:41:42 GMT 2012 Rank 249 Aligned Residues 244 % Identity 13% Template c3bwsA_ PDB info PDB header:unknown function Chain: A: PDB Molecule:protein lp49; PDBTitle: crystal structure of the leptospiral antigen lp49 Resolution 1.99 Å

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		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		S	M	G	G	M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	.	.	E	L	L	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T	L	L	P	Y	Q	V	W	R	H	A
Query Conservation																																										.	.
Alig confidence																							.	.	.	.	.															.	.																												.	.	.	.	.
Template Conservation																							.	.	.	.	.																																												.	.	.	.	.
Template Sequence		F	V	E	T	I	S	I	P	E	H	N	E	L	W	V	S	Q	X	Q	A	N	.	.	.	.	.	A	V	H	V	F	D	L	K	T	L	A	Y	K	A	T	V	D	L	T	G	K	W	S	K	I	L	L	Y	D	P	I	R	D	L	V	Y	C	S	N	W	I	S	E	.	.	.	.	.	D	I	S	V	I	D
Template Known Secondary structure									G	G	G	T							G	G	G	T	.	.	.	.	.							T	T	T										S	S	S	S								T	T	T	T							T	T	T	T	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.																																												.	.	.	.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.						.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.						.	.	260	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.				.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																																											.	.	.
Query SS confidence																																											.	.	.
Query Sequence		I	G	T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	.	.	.	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H	E	Y	S	L	D	H	Y	Q	H	R	F
Query Conservation																																											.	.	.
Alig confidence						.	.	.	.																																		.	.	.
Template Conservation						.	.	.	.
Template Sequence		R	K	T	K	.	.	.	.	L	E	I	R	K	T	D	K	I	G	L	P	R	G	L	L	L	S	K	D	G	K	E	L	Y	I	A	Q	F	S	A	S	N	Q	E	S	G	G	G	R	L	G	I	Y	S	X	D	K	E	K	L	I	D	T	I	G	P	P	G	N	K	R	H	I	V	S	G	N	T	E	N	K
Template Known Secondary structure		T	T	T	T	.	.	.	.										S									T	T	S	S									S		T	T		S										T	T	T	T																			S	S	T	T
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
		264	.	.	.					.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.													.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	L	R	S	N	R	H	G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	.	.	.	.	.	.	.	.	.	.	.	.	L	T	S	L	R	Q	I	N	R	K	T	R	E	V
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.
Template Sequence		I	Y	V	S	D	X	C	C	S	K	I	E	V	Y	D	L	.	.	.	K	E	K	K	V	Q	K	S	I	P	V	F	D	K	P	N	T	I	A	L	S	P	D	G	K	Y	L	Y	V	S	C	R	G	P	N	H	P	T	E	G	Y	L	K	K	G	L	V	L	G	K	V	Y	V	I	D	T	T	T	D	T	V
Template Known Secondary structure							T	T	T	T							T	.	.	.	T	T	T									S	S	S								T	T	S	S												T	T	T		T	T	S			S	S									T	T	T	T
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.				.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	I	A	F	D	D	P	A	Y	V	T	W	I	A	Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	T	P	D	T	L	F	E	L	D
Query Conservation
Alig confidence						.	.	.																													.
Template Conservation						.	.	.																													.
Template Sequence		K	E	F	W	.	.	.	E	A	G	N	Q	P	T	G	L	D	V	S	P	D	N	R	Y	L	V	I	S	D	F	L	D	H	Q	I	.	R	V	Y	R	R	D
Template Known Secondary structure						.	.	.			S	S	S								T	T	S								T	T	T	T			.						T
Template Predicted Secondary structure						.	.	.																													.
Template SS confidence
		417	.	.	420				.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions