Job Description P24555 Confidence 98.70% Date Thu Jan 5 11:41:42 GMT 2012 Rank 200 Aligned Residues 205 % Identity 18% Template c3biwD_ PDB info PDB header:cell adhesion/cell adhesion Chain: D: PDB Molecule:neuroligin-1; PDBTitle: crystal structure of the neuroligin-1/neurexin-1beta synaptic adhesion2 complex Resolution 3.50 Å

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		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.														.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	P	V	S	L	V	Y	H	R	K	H	F	R	K	G	H	N	P	L	L	V	Y	G	Y	G	S	Y	G	A	S	I	D	A	D	F	S	F	S	R	L	S	L	L	D	R	G	F	V	Y	A	I	V	H	V	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	E	L	G	Q	Q	W	Y	E	D
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		L	Y	L	N	I	Y	V	P	T	I	R	D	S	G	G	P	K	P	V	M	V	Y	I	H	G	G	S	Y	M	E	G	T	G	N	L	Y	D	G	S	V	L	A	S	Y	G	N	V	I	V	I	T	V	N	Y	R	L	G	V	L	G	F	L	S	T	G	D	Q	A	A	K	G	N	Y	G	.	.	.	.	.	.
Template Known Secondary structure													S			S											S	S	S	S	S			T	T	T	S										T																	B		S	S	S	S		B					.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.			.	520	.		.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.				.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.				.																							.	.	.
Query SS confidence																									.	.				.																							.	.	.
Query Sequence		G	K	F	L	K	K	K	N	T	F	N	D	Y	L	D	A	C	D	A	L	L	K	L	.	.	G	Y	G	.	S	P	S	L	C	Y	A	M	G	G	S	A	G	G	M	L	M	G	V	A	I	N	.	.	.	Q	R	P	E	L	F	H	G	V	I	A	Q	V	P	F	V	D	V	V	T	T	M	L	D	E	S
Query Conservation																									.	.				.																							.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.															.	.				.																							.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	L	L	D	L	I	Q	A	L	R	W	T	S	E	N	I	G	F	F	G	G	D	P	L	R	I	T	V	F	G	S	G	A	G	G	S	C	V	N	L	L	T	L	S	H	Y	S	E	K	G	L	F	Q	R	A	I	A	Q	S	G	T	A	L	S	S	W	A	V	S	F	Q	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.															G	G	G	G	T												T										T	T	S	T	T	S		T	T	S								T			S	S	S	T	T	S	S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		570	.	.	.	.	.	.	.	.	.	580	.	.	.			.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.			.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
Predicted Secondary structure																.	.																				.	.
Query SS confidence																.	.																				.	.
Query Sequence		I	P	L	T	T	G	E	F	E	E	W	G	N	P	.	.	Q	D	P	Q	Y	Y	E	Y	M	K	S	Y	S	P	Y	D	N	V	T	.	.	A	Q	A	Y	P	H	L	L	V	T	T	G	L	H	D	S	Q	V	Q	Y	W	E	P	A	K	W	V	A	K	L	R	E	L	K	T	D	D	H	L	L	L	L	C
Query Conservation																.	.																				.	.
Alig confidence																.	.																				.	.																											.	.	.
Template Conservation																																																																	.	.	.
Template Sequence		A	K	Y	A	R	I	L	A	T	K	V	G	C	N	V	S	D	T	V	E	L	V	E	C	L	Q	K	K	P	Y	K	E	L	V	D	Q	D	V	Q	P	A	R	Y	H	I	A	F	G	P	V	I	D	G	D	V	I	P	D	D	P	Q	I	L	.	.	.	M	E	Q	G	E	F	L	N	Y	D	I	M	L	G
Template Known Secondary structure												T	S				S	S									T	T	S						T	T	S						T	T	S		S	S	S					S	S	S	S		S						.	.	.			T	T		S
Template Predicted Secondary structure																																																																	.	.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.				.	.	.	.	.	.	.	400	.	.	.	.	.	.
		646	.	.	.	650	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	M	D	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	N	Q	G	E	G
Template Known Secondary structure				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions