Job Description P24555 Confidence 93.05% Date Thu Jan 5 11:41:42 GMT 2012 Rank 356 Aligned Residues 248 % Identity 12% Template c3acpA_ PDB info PDB header:chaperone Chain: A: PDB Molecule:wd repeat-containing protein ygl004c; PDBTitle: crystal structure of yeast rpn14, a chaperone of the 19s regulatory2 particle of the proteasome Resolution 2.00 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		M	G	G	M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	.	.	E	L	L	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T	L	L	P	Y	Q	V	W	R	H	A	I
Query Conservation																																									.	.
Alig confidence																							.	.	.	.	.														.	.																												.	.	.	.	.	.
Template Conservation																							.	.	.	.	.																																											.	.	.	.	.	.
Template Sequence		I	T	K	L	K	F	F	P	S	G	E	A	L	I	S	S	S	Q	D	M	Q	.	.	.	.	.	L	K	I	W	S	V	K	D	G	S	N	P	R	T	L	I	G	H	R	A	T	V	T	D	I	A	I	I	D	R	G	R	N	V	L	S	A	S	L	D	G	T	.	.	.	.	.	.	I	R	L	W	E	C
Template Known Secondary structure									T	T	S	S							T	T	S		.	.	.	.	.						T	T	T											S	S									T	T	T	T							T	T	S		.	.	.	.	.	.						T
Template Predicted Secondary structure																							.	.	.	.	.																																											.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.						160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.							.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.																						230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	S	L	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation																																																														.	.	.
Template Sequence		G	T	G	T	T	I	H	T	F	N	R	K	E	N	P	H	D	G	V	N	S	I	A	L	F	V	G	T	D	R	Q	L	H	E	I	S	T	S	K	K	N	N	L	E	F	G	T	Y	G	K	Y	V	I	A	G	H	V	S	G	V	.	.	.	I	T	V	H	N	V	F	S	K	E	Q	T	I	Q	L	P	S
Template Known Secondary structure		T	T	T									T	T		T	T	S										S					T	T	T	S	S	S					T	T		S	S		T	T								T	T	S		.	.	.						T	T	T
Template Predicted Secondary structure																																																														.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.				.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	R	K	D	H	E	Y	S	L	D	H	Y	Q	H	R	F	Y	L	R	S	N	R	H	G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	L	T	S	L	R	Q	I	N	R
Query Conservation
Alig confidence																											.	.
Template Conservation																											.	.
Template Sequence		K	F	T	C	S	C	N	S	L	T	V	D	G	N	N	A	N	Y	I	Y	A	G	Y	E	N	.	.	G	M	L	A	Q	W	D	L	R	S	P	E	C	P	V	G	E	F	L	I	N	E	G	T	P	I	N	N	V	Y	F	A	A	G	A	L	F	V	S	S	G	F	D	T	S	I	K	L	D	I	I	S	D
Template Known Secondary structure		T	T	S	S									S	S		T	T							T	T	.	.	S							T	T	S	T	T	S		S					S	S	T	T	S									T	T							T	T	T
Template Predicted Secondary structure																											.	.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.			310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.								.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.
Query Sequence		K	T	R	E	V	I	G	I	A	F	D	D	P	.	.	.	.	.	.	.	A	Y	V	T	W	I	A	Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	T	P	D	T	L	F	E	L	D	M	D	T
Query Conservation															.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.																									.	.	.
Template Conservation																																														.	.	.
Template Sequence		P	E	S	E	R	P	A	I	E	F	E	T	P	T	F	L	V	S	N	D	D	E	V	S	Q	F	C	Y	V	S	D	D	E	S	N	G	E	V	L	E	V	G	K	N	.	.	.	N	F	C	A	L	Y	N	L	S	N
Template Known Secondary structure		S	S		S	S					T	T	S							S	S												S	S	S									T	T	.	.	.	T								S
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.				.	.	.	410	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions