Phyre 2 alignment of P24555 with c3a2nF

Job Description P24555
Confidence 98.60% Date Thu Jan 5 11:41:42 GMT 2012

Rank 215 Aligned Residues 228

% Identity 21% Template c3a2nF_

PDB info PDB header:hydrolase Chain: F: PDB Molecule:haloalkane dehalogenase; PDBTitle: crystal structure of dbja (wild type type ii p21)

Resolution 1.89 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	G	V	E	V	P	V	S	L	V	Y	H	R	K	H	F	R	K	G	H	N	P	L	L	V	Y	G	Y	G	S	Y	G	A	S	I	D	A	D	F	S	F	S	R	L	S	L	L	D	R	G	F	V	Y	A	I	V	H	V	R	G	G	G	E	L	G	Q	Q	W	Y	E	D	G	K	F	L	K	K	K	N	T
Query Conservation
Alig confidence															.	.	.	.	.	.																							.	.	.																					.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.																							.	.	.																					.	.	.	.	.	.	.	.
Template Sequence	L	G	S	S	M	A	Y	R	E	T	G	A	Q	D	.	.	.	.	.	.	A	P	V	V	L	F	L	H	G	N	P	T	S	S	H	I	W	R	N	I	L	P	.	.	.	L	V	S	P	V	A	H	C	I	A	P	D	L	I	G	F	G	Q	S	G	.	.	.	.	.	.	.	.	K	P	D	I	A	Y	R
Template Known Secondary structure	T	T									S		T	T	.	.	.	.	.	.	S									T	T			G	G	G	G	T	T	T			.	.	.			T	T	T	S								T	T	S	T	T	S		.	.	.	.	.	.	.	.			S	S
Template Predicted Secondary structure															.	.	.	.	.	.																							.	.	.																					.	.	.	.	.	.	.	.
Template SS confidence
	15	.	.	.	.	20	.	.	.	.	.	.	.	.							.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70									.	.	.	.	.	.	.

	505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.
Query Sequence	F	N	D	Y	L	D	A	C	D	A	L	L	K	L	G	Y	G	S	P	S	L	C	Y	A	M	G	G	S	A	G	G	M	L	M	G	V	A	I	N	Q	R	P	E	L	F	H	G	V	I	A	Q	V	P	F	V	D	V	V	T	T	M	L	D	E	S	I	P	L	T	T	G	E	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.
Alig confidence																		.	.																																																						.	.	.	.	.	.	.	.
Template Conservation																		.	.
Template Sequence	F	F	D	H	V	R	Y	L	D	A	F	I	E	Q	R	G	V	.	.	T	S	A	Y	L	V	A	Q	D	W	G	T	A	L	A	F	H	L	A	A	R	R	P	D	F	V	R	G	L	A	F	M	E	F	I	R	P	M	P	T	W	Q	D	F	H	H	T	E	V	A	E	E	Q	D	H	A	E	A	A	R	A
Template Known Secondary structure																T		.	.		S																					T	T	T													B	S	S	G	G	G	T	T					G	G	G
Template Predicted Secondary structure																		.	.
Template SS confidence
	78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.

																																																										577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	E	W	G	N	P	Q	D	P	Q	Y	Y	E	Y	M	K	S	Y	S	P	Y	D
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	V	F	R	K	F	R	T	P	G	E	G	E	A	M	I	L	E	A	N	A	F	V	E	R	V	L	P	G	G	I	V	R	K	L	G	D	E	E	M	A	P	Y	R	T	P	F	P	T	P	E	S	R	R	P	V	L	A	F	P	R	E	L	P	I	A	G	E	P	A	D	V	Y	E	A	L	Q	S	A	H	A
Template Known Secondary structure						T	S	T	T							T	T	T						T					T		S	S												T	T			S	T	G	G	G										S		B	T	T	B	S
Template Predicted Secondary structure
Template SS confidence
	156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	V	T	A	Q	A	Y	P	H	L	L	V	T	T	G	L	H	D	S	Q	V	Q	Y	W	E	P	A	K	W	V	A	K	L	R	E	L	K	T	D	D	H	L	L	L	L	C	T	D	M	D	S	G	H	G	G	K	S	G	R	F	K	S	Y	E	G	V	A	M	E	Y	A	F	L	V	A	L	A	Q	G	T
Query Conservation
Alig confidence									.																									.	.	.	.									.	.	.								.	.	.
Template Conservation									.																									.	.	.	.									.	.	.								.	.	.
Template Sequence	A	L	A	A	S	S	Y	P	.	K	L	L	F	T	G	E	P	G	A	L	V	S	P	E	F	A	E	R	F	A	A	S	L	.	.	.	.	T	R	C	A	L	I	R	L	.	.	.	G	A	G	L	H	Y	L	.	.	.	Q	E	D	H	A	D	A	I	G	R	S	V	A	G	W	I	A	G	I	E	A	V
Template Known Secondary structure							S		.										S	S	S											T	S	.	.	.	.	S	S							.	.	.					S			.	.	.
Template Predicted Secondary structure									.																									.	.	.	.									.	.	.								.	.	.
Template SS confidence
	236	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.					.	.	270	.	.	.	.	.				.	.	.	.	280	.	.				.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

	680	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	R	P	Q
Template Known Secondary structure	S
Template Predicted Secondary structure
Template SS confidence
	305	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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