Job Description P24555 Confidence 72.24% Date Thu Jan 5 11:41:42 GMT 2012 Rank 388 Aligned Residues 60 % Identity 17% Template c2zkqa_ PDB info PDB header:ribosomal protein/rna Chain: A: PDB Molecule:18s ribosomal rna; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170								.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.
Query Sequence		M	G	G	M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	E	L	L	.	.	.	.	.	.	.	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H
Query Conservation																																												.	.	.	.	.	.	.
Alig confidence																							.	.	.	.																		.	.	.	.	.	.	.
Template Conservation																							.	.	.	.
Template Sequence		V	T	Q	I	A	T	T	P	Q	F	P	D	M	I	L	S	A	S	R	D	K	.	.	.	.	T	I	I	M	W	K	L	T	R	D	E	T	N	Y	G	I	P	Q	R	A	L	R	G	H	S	H	F	V	S	D	V	V	I	S	S	D	G	Q	F	A	L	S	G	S	W	D
Template Known Secondary structure		B								S	S	T	T							T	T	S	.	.	.	.							S	S	S	S											S	S	S				S		S						T	T	S	S							T	T
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.					.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions