Phyre 2 alignment of P24555 with c2y6vB

Job Description P24555
Confidence 99.11% Date Thu Jan 5 11:41:42 GMT 2012

Rank 139 Aligned Residues 250

% Identity 16% Template c2y6vB_

PDB info PDB header:hydrolase Chain: B: PDB Molecule:peroxisomal membrane protein lpx1; PDBTitle: peroxisomal alpha-beta-hydrolase lpx1 (yor084w) from2 saccharomyces cerevisiae (crystal form i)

Resolution 2.83 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.			.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.								.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
Predicted Secondary structure																											.	.																														.	.	.	.	.	.	.
Query SS confidence																											.	.																														.	.	.	.	.	.	.
Query Sequence	I	V	A	R	D	G	V	E	V	P	V	S	L	V	Y	H	R	K	H	F	R	K	G	H	N	P	.	.	L	L	V	Y	G	Y	G	S	Y	G	A	S	I	D	A	D	F	S	F	S	R	L	S	L	L	D	R	G	F	.	.	.	.	.	.	.	V	Y	A	I	V	H	V	R	G	G	G	E	L	G	Q	Q
Query Conservation																											.	.																														.	.	.	.	.	.	.
Alig confidence																											.	.																.	.													.	.	.	.	.	.	.										.	.	.
Template Conservation																																												.	.																													.	.	.
Template Sequence	T	L	A	T	D	R	L	E	L	T	Y	D	V	Y	T	S	A	E	R	R	R	S	R	T	A	T	R	L	N	L	V	F	L	H	G	S	G	M	S	K	V	V	W	.	.	E	Y	Y	L	P	R	L	V	A	A	D	A	E	G	N	Y	A	I	D	K	V	L	L	I	D	Q	V	N	.	.	.	H	G	D	S
Template Known Secondary structure	B																S						T	T												T	T			G	G	G	G	.	.	G	G	G	G	G	G	S					T	T	T													T	T	.	.	.	S
Template Predicted Secondary structure																																												.	.																													.	.	.
Template SS confidence
	24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.				.	.	.	.

	492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.				.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence	W	Y	E	D	G	K	F	L	K	K	K	N	T	F	N	D	Y	L	D	A	C	D	A	L	L	K	L	G	Y	G	S	P	.	.	.	S	L	C	Y	A	M	G	G	S	A	G	G	M	L	M	G	V	A	I	N	Q	R	P	E	L	F	H	G	V	I	A	Q	V	P	F	V	D	V	V	T	T	M	L	D	E
Query Conservation																																	.	.	.
Alig confidence																																	.	.	.
Template Conservation
Template Sequence	A	V	R	N	R	G	R	L	G	T	N	F	N	W	I	D	G	A	R	D	V	L	K	I	A	T	E	L	G	S	I	D	S	H	P	A	L	N	V	V	I	G	H	S	M	G	G	F	Q	A	L	A	C	D	V	L	Q	P	N	L	F	H	L	L	I	L	I	E	P	V	V	I	T	R	K	A	I	P	P	D
Template Known Secondary structure				T	T	T	T	B		S																					G	G	G		S									T														T	T	S		S						S				S							T	T
Template Predicted Secondary structure
Template SS confidence
	101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180

	569	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.						.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Predicted Secondary structure																		.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	S	I	P	L	T	T	G	E	F	E	E	W	G	N	P	Q	D	.	.	.	.	.	P	Q	Y	Y	E	Y	M	K	S	Y	S	P	Y	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																		.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	S	P	Q	I	P	E	N	L	Y	N	S	L	R	L	K	T	D	H	F	A	N	E	S	E	Y	V	K	Y	M	R	N	G	S	F	F	T	N	A	H	S	Q	I	L	Q	N	I	I	D	F	E	R	T	K	G	P	V	R	T	K	M	E	Q	A	Q	N	L	L	C	Y	M	N	M	Q	T	F	A	P	F	L	I
Template Known Secondary structure															T					S	S											T	S	S		T	T	S																					S	S								T	T	S		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
	189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.

			601	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.
Query SS confidence	.	.
Query Sequence	.	.	V	T	A	Q	A	Y	P	H	L	L	V	T	T	G	L	H	D	S	Q	V	Q	Y	W	E	P	A	K	W	V	A	K	L	R	E	L	K	T	D	D	H	L	L	L	L	C	T	D	M	D	S	G	H	G	G	K	S	G	R	F	K	S	Y	E	G	V	A	M	E	Y	A	F	L	V	A	L	A	Q	G
Query Conservation	.	.
Alig confidence	.	.								.											.																.	.	.	.	.	.	.																						.	.
Template Conservation										.											.																.	.	.	.	.	.	.																						.	.
Template Sequence	S	N	V	K	F	V	R	K	R	.	T	I	H	I	V	G	A	R	S	N	.	W	P	P	Q	N	Q	L	F	L	Q	K	T	L	Q	N	.	.	.	.	.	.	.	Y	H	L	D	V	I	P	G	G	S	H	L	V	N	V	E	A	P	D	L	V	.	.	I	E	R	I	N	H	H	I	H	E	F	V	L	T
Template Known Secondary structure	T	T	G	G	G			S		.							T	T			.														S	S	.	.	.	.	.	.	.							T	T			T	T					S					.	.
Template Predicted Secondary structure										.											.																.	.	.	.	.	.	.																						.	.
Template SS confidence
	278	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310	.								.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.			.	.	.	.	.	.	.	340	.	.	.	.	.	.

	679	680	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	L	P	A	T	P	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence	S	P	L	Q	S	S	H	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	348	.	350	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions