Job Description P24555 Confidence 94.17% Date Thu Jan 5 11:41:42 GMT 2012 Rank 346 Aligned Residues 242 % Identity 8% Template c2w18A_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:partner and localizer of brca2; PDBTitle: crystal structure of the c-terminal wd40 domain of human2 palb2 Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	G	M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	E	L	L	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T	L	L	P	Y	Q	V	W	R	H	A	I	G	T
Query Conservation
Alig confidence																		.	.	.																					.																						.	.	.	.
Template Conservation																		.	.	.																					.																						.	.	.	.
Template Sequence		V	L	Q	I	V	P	V	P	D	V	Y	N	L	V	C	V	.	.	.	A	L	G	N	L	E	I	R	E	I	R	A	L	F	C	E	K	Q	V	L	.	L	K	S	G	N	I	K	A	V	L	G	L	T	K	R	R	L	V	S	S	S	.	.	.	.	G	T	L	S	D	Q	Q	V	E	V	M	T	F	A	E
Template Known Secondary structure									T	T			S					.	.	.				S	S	S															.													T	T	T							.	.	.	.	S	S	S	T	T										T
Template Predicted Secondary structure																		.	.	.																					.																						.	.	.	.
Template SS confidence
		919	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.				.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.		.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.					.	.	.	.	980	.	.	.	.	.	.	.	.	.	990
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H	E	Y	S	L	D	H	Y	Q	H	R	F	Y	L	R	S	N	R
Query Conservation
Alig confidence																																							.	.
Template Conservation																																							.	.
Template Sequence		D	G	G	G	K	E	N	Q	F	L	M	P	P	E	E	T	I	L	T	F	A	E	V	Q	G	M	Q	E	A	L	L	G	T	T	I	M	N	.	.	N	I	V	I	W	N	L	K	T	G	Q	L	L	K	K	M	H	I	D	D	A	S	V	C	H	K	A	Y	S	E	M	G	L	L	F	I	V	L	S	P	V
Template Known Secondary structure		T	S												S	S										T	S	T	T							T	T	S	.	.							T	T	T																						T	T
Template Predicted Secondary structure																																							.	.
Template SS confidence
		997	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.			.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.				.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		H	G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	.	.	.	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	L	T	S	L	R	Q	I	N	R	K	T	R	E	V	I	G	I	A	F	D	D	P	A	Y	V	T	W	I	A
Query Conservation																													.	.	.
Alig confidence		.	.	.	.																								.	.	.																						.	.	.																.	.	.
Template Conservation		.	.	.	.																																																.	.	.																.	.	.
Template Sequence		.	.	.	.	F	Q	L	I	V	I	N	P	K	T	T	L	S	V	G	V	M	L	Y	C	L	P	P	G	Q	A	G	R	F	L	E	G	D	V	K	D	H	C	A	A	A	I	L	T	S	G	T	.	.	.	I	A	I	W	D	L	L	L	G	Q	C	T	A	L	L	.	.	.	P	P	V	Q	H	W	S	F
Template Known Secondary structure		.	.	.	.								T	T	T	T												T	T												T	T							T	T	S		.	.	.						T	T	T		S						.	.	.
Template Predicted Secondary structure		.	.	.	.																																																.	.	.																.	.	.
Template SS confidence
						1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.				.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.				.	.	.	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	T	P	D	T	L	F	E	L	D	M	D
Query Conservation
Alig confidence																		.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		V	K	W	S	G	T	D	S	H	L	L	A	G	Q	K	D	.	.	.	.	G	N	I	F	V	Y	H	Y	S
Template Known Secondary structure						S	S	S	S							T	T	.	.	.	.	S
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		1162	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.					.	.	1180	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions