Job Description P24555 Confidence 98.70% Date Thu Jan 5 11:41:42 GMT 2012 Rank 201 Aligned Residues 226 % Identity 15% Template c2qmqA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:protein ndrg2; PDBTitle: crystal structure of a n-myc downstream regulated 2 protein (ndrg2,2 syld, ndr2, ai182517, au040374) from mus musculus at 1.70 a3 resolution Resolution 1.70 Å

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		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.					.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure																																															.	.	.	.
Query SS confidence																																															.	.	.	.
Query Sequence		E	H	L	W	I	V	A	R	D	G	V	E	V	P	V	S	L	V	Y	H	R	K	H	F	R	K	G	H	N	P	L	L	V	Y	G	Y	G	S	Y	G	A	S	I	D	A	.	.	.	.	D	F	S	F	S	R	L	S	L	L	D	R	G	F	V	Y	A	I	V	H	V	R	G	G	G	E	L	G	Q	Q	W
Query Conservation																																															.	.	.	.
Alig confidence												.								.	.	.	.																								.	.	.	.													.																		.
Template Conservation												.								.	.	.	.																																								.																		.
Template Sequence		H	T	H	S	V	E	T	P	Y	G	.	S	V	T	F	T	V	Y	.	.	.	.	G	T	P	K	P	K	R	P	A	I	F	T	Y	H	D	V	G	L	N	Y	K	S	C	F	Q	P	L	F	R	F	G	D	M	Q	E	I	I	Q	N	.	F	V	R	V	H	V	D	A	P	G	M	E	E	G	A	P	V	.
Template Known Secondary structure									T	T		.								.	.	.	.	S				T	T										T	T												T	S								T	T	.	S								T	T	T	S	T	T				.
Template Predicted Secondary structure												.								.	.	.	.																																								.																		.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.		10	.	.	.	.	.	.					.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	D	G	K	F	L	K	K	K	N	T	F	N	D	Y	L	D	A	C	D	A	L	L	K	L	G	Y	G	S	P	S	L	C	Y	A	M	G	G	S	A	G	G	M	L	M	G	V	A	I	N	Q	R	P	E	L	F	H	G	V	I	A	Q	V	P	F	V	D	V	V	T	T	M	L	D	E	S	I	P	L
Query Conservation
Alig confidence		.	.	.																								.	.																																									.	.	.	.	.	.	.
Template Conservation		.	.	.																								.	.																																									.	.	.	.	.	.	.
Template Sequence		.	.	.	F	P	L	G	Y	Q	Y	P	S	L	D	Q	L	A	D	M	I	P	C	I	L	Q	Y	.	.	L	N	F	S	T	I	I	G	V	G	V	G	A	G	A	Y	I	L	S	R	Y	A	L	N	H	P	D	T	V	E	G	L	V	L	I	N	I	D	P	N	.	.	.	.	.	.	.	A	K	G	W	M
Template Known Secondary structure		.	.	.			T	T												T								.	.		T										T														G	G	G								S					.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.																								.	.																																									.	.	.	.	.	.	.
Template SS confidence
					112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.								.	.	.	.	.
		573	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.																																											.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	T	G	E	F	E	E	W	G	N	P	Q	D	P	Q	Y	Y	E	Y	M	K	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	Y	D	N	V	T	A	Q	A	Y	P	H	L	L
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation																																																																															.
Template Sequence		D	W	A	A	H	K	L	T	G	L	T	S	S	I	P	D	M	I	L	G	H	L	F	S	Q	E	E	L	S	G	N	S	E	L	I	Q	K	Y	R	G	I	I	Q	H	A	P	N	L	E	N	I	E	L	Y	W	N	S	Y	N	N	R	R	D	L	N	F	E	R	G	G	E	T	T	L	K	C	P	.	V	M
Template Known Secondary structure											T	T	S											S							T	T													T		T	T													T						S			T	T						S		.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.
		611	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	T	G	L	H	D	S	Q	V	Q	Y	W	E	P	A	K	W	V	A	K	L	R	E	L	K	T	D	D	H	L	L	L	L	C	T	D	M	D	S	G	H	G	G	K	S	G	R	F	K	S	Y	E	G	V	A	M	E	Y
Query Conservation
Alig confidence									.	.	.	.																								.	.	.
Template Conservation									.	.	.	.																								.	.	.
Template Sequence		L	V	V	G	D	Q	A	.	.	.	.	P	H	E	D	A	V	V	E	C	N	S	K	L	D	P	T	Q	T	S	F	L	K	M	.	.	.	A	D	S	G	G	Q	P	Q	L	T	Q	P	G	K	L	T	E	A	F	K	Y	F
Template Known Secondary structure						T	T	S	.	.	.	.	T	T											S		G	G	G							.	.	.	T	T		T	T
Template Predicted Secondary structure									.	.	.	.																								.	.	.
Template SS confidence
		259	260	.	.	.	.	.					.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.				.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions