Job Description P24555 Confidence 97.35% Date Thu Jan 5 11:41:42 GMT 2012 Rank 287 Aligned Residues 295 % Identity 8% Template c2pm9A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec31; PDBTitle: crystal structure of yeast sec13/31 vertex element of the2 copii vesicular coat Resolution 3.30 Å

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		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.							150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.					.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.																							.	.	.	.
Query SS confidence																											.	.	.	.	.	.																							.	.	.	.
Query Sequence		E	F	Y	S	M	G	G	M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	.	.	.	.	.	.	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	E	L	L	D	.	.	.	.	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V
Query Conservation																											.	.	.	.	.	.																							.	.	.	.
Alig confidence																											.	.	.	.	.	.																							.	.	.	.
Template Conservation
Template Sequence		E	F	S	R	T	A	T	F	A	W	S	H	D	K	I	P	L	L	V	S	G	T	V	S	G	T	V	D	A	N	F	S	T	D	S	S	L	E	L	W	S	L	L	A	A	D	S	E	K	P	I	A	S	L	Q	V	D	S	K	F	N	D	L	D	W	S	H	N	N	K	I	I	A	G	A	L	D	N	G	S
Template Known Secondary structure						S		B			B		S	S	S	S						B		B	S	S				S	S												S	S	S	G	G	G		S		S						S	S									S	S	S	S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																																		.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	L	P	Y	Q	V	W	R	H	A	I	G	T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	.	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																		.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																											.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	L	E	L	Y	S	T	N	E	A	N	N	A	I	N	S	M	A	R	F	S	N	H	S	S	S	V	K	T	V	K	F	N	A	K	Q	D	N	V	L	A	S	G	G	N	N	G	E	I	F	I	W	D	M	N	K	C	T	E	S	P	S	N	Y	T	P	L	T	P	G	Q	S	M	S	S
Template Known Secondary structure		.	.	.	.	.	.							S	S	T	T	S											S	S	S									S	S	S	T	T	B						S	S	S				B		B	T	T	T	T	S	S		T	T	T				B					S			S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
																																					251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H	E	Y	S	L	D	H	Y	Q	H	R	F	Y	L	R	S	N	R	H	G	K	N	F	G	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	E	V	I	S	L	A	W	N	Q	S	L	A	H	V	F	A	S	A	G	S	S	N	F	A	S	I	W	D	L	K	A	K	K	E	V	I	H	L	S	Y	T	S	P	N	S	G	I	K	Q	Q	L	S	V	V	E	W	H	P	K	N	S	T	R	V	A	T	A	T	G	S	D	N	D	P	S	I	L	I
Template Known Secondary structure		S										S	S		T	T						S	S	S	S							T	T	T	T												S	S													S	S		T	T									S	S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	L	T	S	L	R	Q	I	N	R	K	T	R	E	V	I	G	I	A	F	D	D	P	A	Y	V	T	W	I	A	Y	N	P	E	P	E	T	A	R	L
Query Conservation
Alig confidence																																																.	.	.	.
Template Conservation																																																.	.	.	.
Template Sequence		W	D	L	R	N	A	N	T	P	L	Q	T	L	N	Q	G	H	Q	K	G	I	L	S	L	D	W	C	H	Q	D	E	H	L	L	L	S	S	G	R	D	N	T	V	L	L	W	.	.	.	.	N	P	E	S	A	E	Q	L	S	Q	F	P	A	R	G	N	W	C	F	K	T	K	F	A	P	E	A	P	D	L
Template Known Secondary structure				T	T	S	T	T	S		S	B				S			S	S									S	S		S	S							S	S	S						.	.	.	.		S	S	S										S	S	S									T	T		T	T
Template Predicted Secondary structure																																																.	.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.					.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.															.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	Y	G	Y	S	S	M	T	T	P	D	T	L	F	E	L	D	M	D	T	G	E	R	R	V	L	K	Q	T	E	V	P	G	F	Y	A	A	N	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	H	L	W	I	V	A	R	D	G	V	E	V	P	V	S
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.
Template Sequence		F	A	C	A	S	F	D	.	.	.	N	K	I	E	V	Q	T	L	Q	N	L	T	N	T	L	D	E	S	K	E	K	P	S	V	F	H	L	Q	A	P	T	W	Y	G	E	P	S	P	A	A	H	W	A	F	G	G	K	L	V	Q	I	T	P	D	G	K	G	V	S	I	T
Template Known Secondary structure							S	S	.	.	.	S							S						S	S					S				S	S						S	T	T				S							T	T	T					B		T	T	S	S		B			B
Template Predicted Secondary structure									.	.	.
Template SS confidence
		316	.	.	.	320	.	.				.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions