Job Description P24555 Confidence 96.01% Date Thu Jan 5 11:41:42 GMT 2012 Rank 320 Aligned Residues 313 % Identity 11% Template c2oitA_ PDB info PDB header:oncoprotein Chain: A: PDB Molecule:nucleoporin 214kda; PDBTitle: crystal structure of the n-terminal domain of the human2 proto-oncogene nup214/can Resolution 1.65 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.														.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	G	G	M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	W	Y	P	E	L	L	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.																			.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Template Conservation																			.																																																														.
Template Sequence		I	H	H	L	A	L	S	C	D	N	L	T	L	S	A	C	M	.	M	S	S	E	Y	G	S	I	I	A	F	F	D	V	R	T	F	S	N	E	A	K	Q	Q	K	R	P	F	A	Y	H	K	L	L	K	D	A	G	G	M	V	I	D	M	K	W	N	P	T	V	P	S	M	V	A	V	C	L	A	D	G	.
Template Known Secondary structure									T	T	S								.			T	T	T															T	T		S	S				S								S	G	G	G	S								S	S		T	T							T	T	S	.
Template Predicted Secondary structure																			.																																																														.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		L	L	P	Y	Q	V	W	R	H	A	I	G	T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence		.	.	.	.								.	.	.																																					.	.	.																							.	.	.	.	.
Template Conservation		.	.	.	.								.	.	.																																					.	.	.
Template Sequence		.	.	.	.	S	I	A	V	L	Q	V	.	.	.	T	E	T	V	K	V	C	A	T	L	P	S	T	V	A	V	T	S	V	C	W	S	P	K	G	K	Q	L	A	V	G	K	Q	N	G	T	.	.	.	V	V	Q	Y	L	P	T	L	Q	E	K	K	V	I	P	C	P	P	F	Y	E	S	D	H	P	V	R
Template Known Secondary structure		.	.	.	.								.	.	.	S	S	S									G	G	G									T	T	S	S							T	T	S		.	.	.						T	T											T	T			T	T	S
Template Predicted Secondary structure		.	.	.	.								.	.	.																																					.	.	.
Template SS confidence
						173	.	.	.	.	.	.				180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.					.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		H	E	Y	S	L	D	H	Y	Q	H	R	F	Y	L	R	S	N	R	H	G	K	.	.	.	.	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	L	T	S	L	R	Q	I	N	R	K
Query Conservation																							.	.	.	.
Alig confidence																							.	.	.	.
Template Conservation
Template Sequence		V	L	D	V	L	W	I	G	T	Y	V	F	A	I	V	Y	A	A	A	D	G	T	L	E	T	S	P	D	V	V	M	A	L	L	P	K	K	E	E	K	H	P	E	I	F	V	N	F	M	E	P	C	Y	G	S	C	T	E	R	Q	H	H	Y	Y	L	S	Y	I	E	E	W	D	L	V	L	A	A	S	A	A
Template Known Secondary structure										T	T									T	T			S	S	S												T	T	T												S	S					S	S	S										G	G	G	T							T	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	E	V	I	G	I	A	F	D	D	P	A	Y	V	T	W	I	A	Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	T	P	D	T	L	F	E	L	D	M	D	T	G	E	R	R	V	L	K	Q	T	E	V	P	G	F	Y	A	A	N	Y	R	S	E	H	L	W	I	V	A	R	D	G
Query Conservation
Alig confidence																																																																.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.
Template Sequence		S	T	E	V	S	I	L	A	R	Q	S	D	Q	I	N	W	E	S	W	L	L	E	D	S	S	R	A	E	L	P	V	T	D	K	S	D	D	S	L	P	M	G	V	V	V	D	Y	T	N	Q	V	E	I	T	I	S	D	E	K	T	L	P	.	.	.	.	.	.	P	A	P	V	L	M	L	L	S	T	D	G
Template Known Secondary structure			S	B								T	T	S	S									G	G	G			B			B		T	T	S		B																				T	T					.	.	.	.	.	.										T	T	S
Template Predicted Secondary structure																																																																.	.	.	.	.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.							.	.	.	.	.	390	.	.	.	.	.	.
		427	.	.	430	.	.	.	.		.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		V	E	V	P	V	S	L	V	.	Y	H	R	K	H	F	R	K	G	H	N	P	L	L	V	Y	G	Y	G	S	Y	G	A	S	I
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		V	L	C	P	F	Y	M	I	N	Q	N	P	G	V	K	S	L	I	K	T	P	E	R	L	S	L	E	G	E	R	Q	P	K	S
Template Known Secondary structure												S	T	T														T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions