Job Description P24555 Confidence 98.75% Date Thu Jan 5 11:41:42 GMT 2012 Rank 188 Aligned Residues 263 % Identity 15% Template c2j57J_ PDB info PDB header:oxidoreductase Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain; PDBTitle: x-ray reduced paraccocus denitrificans methylamine2 dehydrogenase n-quinol in complex with amicyanin. Resolution 2.25 Å

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		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.					.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																																															.	.	.	.
Query SS confidence																																																															.	.	.	.
Query Sequence		T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	E	L	L	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T	.	.	.	.	L	L	P	Y	Q	V	W	R	H	A	I	G	T	P	A
Query Conservation																																																															.	.	.	.
Alig confidence																																																															.	.	.	.
Template Conservation
Template Sequence		A	P	D	A	R	R	V	Y	V	N	D	P	A	H	F	A	A	V	T	Q	Q	F	V	I	D	G	E	A	G	R	V	I	G	M	I	D	G	G	F	L	P	N	P	V	V	A	D	D	G	S	F	I	A	H	A	S	T	V	F	S	R	I	A	R	G	E	R	T	D	Y	V	E	V	F	D	P	V	T	L	L
Template Known Secondary structure					T	T								G	G	G		S	S								T	T	T	T										S	S							T	T	S	S												T	T													T	T	T
Template Predicted Secondary structure
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.					.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270								.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.																																													.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.																																													.	.	.	.	.	.	.
Query Sequence		S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	.	.	.	.	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	.	.	.	.	.	.	.	H	E	Y	S	L	D	H	Y	Q
Query Conservation																		.	.	.	.																																													.	.	.	.	.	.	.
Alig confidence																		.	.	.	.																						.																							.	.	.	.	.	.	.
Template Conservation																																											.
Template Sequence		P	T	A	D	I	E	L	P	D	A	P	R	F	L	V	G	T	Y	P	W	M	T	S	L	T	P	D	G	K	T	L	L	F	Y	Q	F	S	P	A	P	A	.	V	G	V	V	D	L	E	G	K	A	F	K	R	M	L	D	V	P	D	C	Y	H	I	F	P	T	A	P	D	T	F	F	M	H	C	R	D	G
Template Known Secondary structure									T	T							S			G	G	G					T	T	S									S	S	S			.						T	T	T	T										S									T	T							T	T	S
Template Predicted Secondary structure																																											.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.														.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	R	F	Y	L	R	S	N	R	H	G	K	N	F	G	L	Y	R	T	R	M	R	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	A	K	V	A	F	G	T	E	G	T	P	E	I	T	H	T	E	V	F	H	P	E	D	E	F	L	I	N	H	P	A	Y	S	Q	K	A	G	R	L	V	W	P	T	Y	T	G	K	I	H	Q	I	D	L	S	S	G	D	A	K	F	L	P	A	V	E	A	L	T	E	A	E	R	A	D	G	W	R	P
Template Known Secondary structure										S	S	S	S										S		T	T	S		B		S						T	T	T	T						B	T	T	S								T	T	S	S									S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
									321	.	.	.	.	.	.	.	.	330	.	.	.	.	.								.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	.	.	.	.	.	.	.	G	L	T	S	L	R	Q	I	N	R	K	T	R	E	V	I	G	I	A	F	D	D	P	A	Y	V	T	W	I	A	Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	T	P	D
Query Conservation		.	.	.	.	.	.	.																.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																.	.	.	.	.	.	.																				.	.	.																											.	.
Template Conservation																																																		.	.	.																											.	.
Template Sequence		G	G	W	Q	Q	V	A	Y	H	R	A	L	D	R	I	Y	L	L	V	D	Q	R	D	E	W	R	H	K	T	A	S	R	F	V	V	V	L	D	A	K	T	G	E	R	L	A	K	F	.	.	.	E	M	G	H	E	I	D	S	I	N	V	S	Q	D	E	K	P	L	L	Y	A	L	S	T	G	D	.	.	K
Template Known Secondary structure			S	S	S						T	T	T	T											T	T		T	T	S										T	T	T								.	.	.														S	S	S								T	T	T	.	.	T
Template Predicted Secondary structure																																																		.	.	.																											.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.				.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.			.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	F	E	L	D	M	D	T	G	E	R	R	V	L	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	Y	I	H	D	A	E	S	G	E	E	L	R	S	V	N
Template Known Secondary structure								T	T	T
Template Predicted Secondary structure
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions