Job Description P24555 Confidence 96.96% Date Thu Jan 5 11:41:42 GMT 2012 Rank 296 Aligned Residues 196 % Identity 11% Template c2j04B_ PDB info PDB header:transcription Chain: B: PDB Molecule:ydr362cp; PDBTitle: the tau60-tau91 subcomplex of yeast transcription factor2 iiic Resolution 3.2 Å

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		129	130	.	.	.	.	.	.	.	.	.							140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.														.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	G	G	M	A	I	T	P	D	N	T	.	.	.	.	.	.	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	N	W	Y	P	E	L	L	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V
Query Conservation													.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.											.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																													.	.	.	.	.																																												.
Template Sequence		V	W	D	L	K	W	H	E	G	C	H	A	P	H	L	V	G	C	L	S	F	V	S	Q	E	G	T	.	.	.	.	.	I	N	F	L	E	I	I	D	N	A	T	D	V	H	V	F	K	M	C	E	K	P	S	L	T	L	S	L	A	D	S	L	I	T	T	F	D	F	L	S	P	T	T	.	V	V	C	G
Template Known Secondary structure									S	S				S	S	S	S								T	T	S		.	.	.	.	.										S	S	S	S	S							S		S						T	T	T								S	S	S	S		.
Template Predicted Secondary structure																													.	.	.	.	.																																												.
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.						.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.		.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	H	P	V	T	L	L	P	Y	Q	V	W	R	H	A	I	G	T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K
Query Conservation
Alig confidence							.	.	.	.	.	.																																														.	.
Template Conservation							.	.	.	.	.	.																																														.	.
Template Sequence		F	K	N	G	F	.	.	.	.	.	.	V	A	E	F	D	L	T	D	P	E	V	P	S	F	Y	D	Q	V	H	D	S	Y	I	L	S	V	S	T	A	Y	S	D	F	E	D	T	V	V	S	T	V	A	V	D	G	.	.	Y	F	Y	I	F	N	P	K	D	I	A	T	T	K	T	T	V	S	R	F	R	G
Template Known Secondary structure			T	T	S		.	.	.	.	.	.						T	T	B		S	S		S						S	S	S											T	T	S									T	T	S	.	.							G	G	G												S
Template Predicted Secondary structure							.	.	.	.	.	.																																														.	.
Template SS confidence
		440	.	.	.	.							.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.			490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	E	Y	S	L	D	H	Y	Q	H	R	F	Y	L	R	S	N	R	H	G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	L	T	S	L	R
Query Conservation
Alig confidence																							.	.																																			.
Template Conservation																							.	.																																			.
Template Sequence		S	N	L	V	P	V	V	Y	C	P	Q	I	Y	S	Y	I	Y	S	D	G	A	.	.	S	S	L	R	A	V	P	S	R	A	A	F	A	V	H	P	L	V	S	R	E	T	T	I	T	A	I	G	V	S	R	L	H	P	.	M	V	L	A	G	S	A	D	G	S	L	I	I	T
Template Known Secondary structure			S								T	T	T	T							S	S	.	.	S							T	T		T	T									S	S									S	S			.	B						T	T	T
Template Predicted Secondary structure																							.	.																																			.
Template SS confidence
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.			.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.		.	.	.	570	.	.	.	.	.	.	.	.	.	580

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions