Job Description P24555 Confidence 84.27% Date Thu Jan 5 11:41:42 GMT 2012 Rank 376 Aligned Residues 248 % Identity 8% Template c2fp8A_ PDB info PDB header:lyase Chain: A: PDB Molecule:strictosidine synthase; PDBTitle: structure of strictosidine synthase, the biosynthetic entry to the2 monoterpenoid indole alkaloid family Resolution 2.30 Å

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		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.																						.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	G	M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	E	L	L	D	N	V	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	F	V	W	A	N	D	S	W	I	F	Y	Y
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.
Template Sequence		N	S	F	T	F	D	S	T	N	K	G	F	Y	T	S	V	Q	D	G	.	.	.	.	.	R	V	I	K	Y	E	G	P	N	S	G	F	V	D	F	A	Y	A	S	P	Y	W	N	K	A	F	C	E	N	S	T	D	A	E	K	R	P	L	C	G	R	T	Y	D	I	S	Y	N	L	Q	N	N	Q	L	Y	I
Template Known Secondary structure								T	T		S	S						T	T	S	.	.	.	.	.								T	T	T								S		T	T							T	T				G	G	G														T	T	T	T
Template Predicted Secondary structure																					.	.	.	.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.						.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.														.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	K	H	P	V	T	L	L	P	Y	Q	V	W	R	H	A	I	G	T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	E	V	R	L	L	D	A	E
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.
Template Sequence		V	D	C	Y	Y	H	.	.	.	.	.	L	S	V	V	G	S	E	G	G	H	A	T	Q	L	A	T	S	V	D	G	V	P	F	K	W	L	Y	A	V	T	V	D	Q	R	T	G	I	V	Y	F	T	D	V	S	T	L	Y	D	D	R	G	V	Q	Q	I	M	D	T	S	D	K	T	G	R	L	I	K	Y	D
Template Known Secondary structure				T	T	T		.	.	.	.	.						T	T									S			T	T				S									T	T	T								S		S	S			T	T									T
Template Predicted Secondary structure								.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.						.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H	E	Y	S	L	D	H	Y	Q	H	R	F	Y	L	R	S	N	R	H	G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R
Query Conservation
Alig confidence																																					.	.
Template Conservation																																					.	.
Template Sequence		P	S	T	K	E	T	T	L	L	L	K	E	L	H	V	P	G	G	A	E	V	S	A	D	S	S	F	V	L	V	A	E	F	L	S	.	.	H	Q	I	V	K	Y	W	L	E	G	P	K	K	G	T	A	E	V	L	V	K	I	P	N	P	G	N	I	K	R	N	A	D	G	H	F	W	V	S	S	S	E	E
Template Known Secondary structure		T	T	T	T										S									T	T	S	S							G	G	G	.	.	T							S	S	S	T	T	T	T									S	S								T	T	S
Template Predicted Secondary structure																																					.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
										336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	G	L	T	S	L	R	Q	I	N	R	K	T	R	E	V	I	G	I	A	F	D	D	P	A	Y	V	T	W	I	A	Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	T	P	D	T	L	F
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	G	N	M	H	G	R	V	D	P	K	G	I	K	F	D	E	F	G	N	I	L	E	V	I	P	L	P	P	P	F	A	G	E	H	F	E	Q	I	Q	E	H	D	G	L	L	Y	I	G	T	L	F	H	G	S	V	G	I	L	V	Y
Template Known Secondary structure		T	T	S	S	T	T	S											T	T	S										T	T	T	T	T	S									T	T							S	S		S
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions