Job Description P24555 Confidence 79.49% Date Thu Jan 5 11:41:42 GMT 2012 Rank 379 Aligned Residues 231 % Identity 11% Template c1r5mA_ PDB info PDB header:transcription Chain: A: PDB Molecule:sir4-interacting protein sif2; PDBTitle: crystal structure of the c-terminal wd40 domain of sif2 Resolution 1.55 Å

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		129	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170											.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure										.																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence										.																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		M	G	G	M	A	I	T	P	.	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	E	L	L	.	.	.	.	.	.	.	.	.	.	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T	L	L
Query Conservation										.																																			.	.	.	.	.	.	.	.	.	.
Alig confidence										.													.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation																							.	.	.	.	.																																																				.	.	.
Template Sequence		I	V	S	S	T	W	N	P	L	D	E	S	I	L	A	Y	G	E	K	N	S	.	.	.	.	.	V	A	R	L	A	R	I	V	E	T	Y	W	K	L	T	I	I	A	E	L	R	H	P	F	A	L	S	T	N	Q	V	T	C	L	A	W	S	H	D	G	N	S	I	V	T	G	V	E	N	G	E	.	.	.
Template Known Secondary structure			S						S	S		T	T							T	B	T	.	.	.	.	.																													B									T	T	S	S							T	T	S		.	.	.
Template Predicted Secondary structure																							.	.	.	.	.																																																				.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180						.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	Y	Q	V	W	R	H	A	I	G	T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.						.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.						.	.	.	.
Template Sequence		.	.	.	L	R	L	W	N	.	.	.	.	K	T	G	A	L	L	N	V	L	N	F	H	R	A	P	I	V	S	V	K	W	N	K	D	G	T	H	I	I	S	M	D	V	E	N	V	T	I	L	W	N	V	I	S	G	T	V	M	Q	H	F	E	L	K	G	S	L	G	V	D	V	E	W	V	D	D	D	K
Template Known Secondary structure		.	.	.						.	.	.	.	T	T	S											S									T	T	S	S							T	T								T	T	T	T													B	S							T	T
Template Predicted Secondary structure		.	.	.						.	.	.	.
Template SS confidence
					244	.	.	.	.					.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
																																																						251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H	E	Y	S	L	D	H	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	V	I	P	G	P	K	G	A	I	F	V	Y	Q	I	T	E	K	T	P	T	G	K	L	I	G	H	H	G	P	I	S	V	L	E	F	N	D	T	N	K	L	L	L	S	A	S	D	D	G	T	L	R	I	W	H	G	G	N	G	N	S	Q	N	C	F	Y	G	H	S	Q	S	I	V	S	A	S	W	V	G
Template Known Secondary structure							G	G	G							T	T		S	S		S							S	S									T	T	T	T							T	T	S							S	S	S	B	S		S							S	S									T
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350							.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.
Query Sequence		Q	H	R	F	Y	L	R	S	N	R	H	G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	L	T	S	L	R	Q	I	N	R	K	T	R	E	V	.	.	.	.	.	.	I	G
Query Conservation																																																																										.	.	.	.	.	.
Alig confidence											.	.	.	.																																														.	.	.												.	.	.	.	.	.
Template Conservation											.	.	.	.																																														.	.	.
Template Sequence		D	D	K	V	I	S	C	S	M	.	.	.	.	D	G	S	V	R	L	W	S	L	K	Q	N	T	L	L	A	L	S	I	V	D	G	V	P	I	F	A	G	R	I	S	Q	D	G	Q	K	Y	A	V	A	F	M	D	G	Q	.	.	.	V	N	V	Y	D	L	K	K	L	N	S	P	L	P	I	P	L	Y	A
Template Known Secondary structure		T	T							T	.	.	.	.	T	S							T	T	T	T									T	T										T	T	S	S							T	T	S		.	.	.
Template Predicted Secondary structure											.	.	.	.																																														.	.	.
Template SS confidence
		412	.	.	.	.	.	.	.	420					.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.				.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	F	D	D	P	A	Y	V	T	W	I	A	Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Y	Q	S	S	Q	D	N	D	Y	I	F	D	L	S	W	N	C	A	G	N	K	I	S	V	A	Y	S	L
Template Known Secondary structure						T	T												T	T	S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions