Job Description P24555 Confidence 97.83% Date Thu Jan 5 11:41:42 GMT 2012 Rank 269 Aligned Residues 259 % Identity 8% Template c1pi6A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: yeast actin interacting protein 1 (aip1), orthorhombic crystal form Resolution 2.50 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170								.	.	.	.	.	.	.	.	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.												.	.
Query SS confidence																																												.	.	.	.	.	.	.												.	.
Query Sequence		M	G	G	M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	E	L	L	.	.	.	.	.	.	.	D	N	V	E	P	S	F	V	W	A	N	.	.	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T	L	L	P	Y
Query Conservation																																												.	.	.	.	.	.	.												.	.
Alig confidence																						.	.	.	.	.	.																	.	.	.	.	.	.	.												.	.														.	.	.	.	.
Template Conservation																						.	.	.	.	.	.																																																		.	.	.	.	.
Template Sequence		T	T	H	L	S	Y	D	P	T	T	N	A	I	A	Y	P	C	G	K	S	.	.	.	.	.	.	A	F	V	R	C	L	D	D	G	D	S	K	V	P	P	V	V	Q	F	T	G	H	G	S	S	V	V	T	T	V	K	F	S	P	I	K	G	S	Q	Y	L	C	S	G	D	E	S	G	K	.	.	.	.	.
Template Known Secondary structure									T	T	T	T							T	T		.	.	.	.	.	.									S			S	S		S						T	T	T	T	S									S	S	T	T									T	T	S		.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.																																																		.	.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40							.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220						.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.
Query SS confidence																							.	.	.	.	.
Query Sequence		Q	V	W	R	H	A	I	G	T	P	A	S	Q	D	K	L	I	Y	E	E	K	.	.	.	.	.	D	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H	E	Y	S
Query Conservation																							.	.	.	.	.
Alig confidence		.																					.	.	.	.	.																												.
Template Conservation		.																																																					.
Template Sequence		.	V	I	V	W	G	W	T	F	D	K	E	S	N	S	V	E	V	N	V	K	S	E	F	Q	V	L	A	G	P	I	S	D	I	S	W	D	F	E	G	R	R	L	C	V	V	G	E	G	R	D	N	F	.	G	V	F	I	S	W	D	S	G	N	S	L	G	E	V	S	G	H	S	Q	R	I	N	A	C	H
Template Known Secondary structure		.										T	T	T	T														S	S									T	T	S										S	S		S	.						S	S	S			B		B				S		S	S
Template Predicted Secondary structure		.																																																					.
Template SS confidence
			90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	H	Y	Q	H	R	F	Y	L	R	S	N	R	H	G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	L	T	S	L	R	Q	I	N	R	K	T	R	E	V	I	G	I	A
Query Conservation
Alig confidence																		.	.
Template Conservation																		.	.
Template Sequence		L	K	Q	S	R	P	M	R	S	M	T	V	G	D	D	G	.	.	S	V	V	F	Y	Q	G	P	P	F	K	F	S	A	S	D	R	T	H	H	K	Q	G	S	F	V	R	D	V	E	F	S	P	D	S	G	E	F	V	I	T	V	G	S	D	R	K	I	S	C	F	D	G	K	S	G	E	F	L	K	Y	I
Template Known Secondary structure				S	S	S	S								B	T	T	.	.							T	T	T	B								S	S	S		T	T		B								S	T	T									T	T								T	T	T
Template Predicted Secondary structure																		.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	D	P	A	Y	V	T	W	I	A	Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	T	P	D	T	L	F	E	L	D	M	D	T	G	E	R	R	V	L	K	Q	T	E
Query Conservation
Alig confidence																														.	.	.
Template Conservation																														.	.	.
Template Sequence		E	D	D	Q	E	P	V	Q	G	G	I	F	A	L	S	W	L	D	S	Q	K	F	A	T	V	G	A	D	.	.	.	A	T	I	R	V	W	D	V	T	T	S	K	C	V	Q	K	W	T	L	D
Template Known Secondary structure				T	T					S								S	S	S	S							T	T	.	.	.	T							T	T	T	T
Template Predicted Secondary structure																														.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.				.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions