Job Description P24555 Confidence 97.95% Date Thu Jan 5 11:41:42 GMT 2012 Rank 268 Aligned Residues 249 % Identity 7% Template c1nr0A_ PDB info PDB header:structural protein Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: two seven-bladed beta-propeller domains revealed by the2 structure of a c. elegans homologue of yeast actin3 interacting protein 1 (aip1). Resolution 1.70 Å

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		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	.	.	E	L	L	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T	L	L	P	Y	Q	V	W	R	H	A	I	G	T	P
Query Conservation																																						.	.
Alig confidence																			.	.	.	.	.	.														.	.																												.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.																																											.	.	.	.	.	.
Template Sequence		L	G	N	T	P	A	G	D	K	I	Q	Y	C	N	G	T	S	.	.	.	.	.	.	V	Y	T	V	P	V	G	S	L	T	D	T	E	I	Y	T	E	H	S	H	Q	T	T	V	A	K	T	S	P	S	G	Y	Y	C	A	S	G	D	V	H	G	N	.	.	.	.	.	.	V	R	I	W	D	T	T	Q	T
Template Known Secondary structure						T	T	S	S							T	T		.	.	.	.	.	.						T	T		S	S									S	S									T	T	S	S							T	T	S		.	.	.	.	.	.						S	S	S	T
Template Predicted Secondary structure																			.	.	.	.	.	.																																											.	.	.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40							.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.							.	.	.	.	.	.	.	90	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H	E	Y	S	L	D	H	Y	Q	H	R	F	Y	L	R	S	N	R	H
Query Conservation
Alig confidence																.																								.
Template Conservation																.																								.
Template Sequence		T	H	I	L	K	T	T	I	P	V	F	S	G	P	.	V	K	D	I	S	W	D	S	E	S	K	R	I	A	A	V	G	E	G	R	E	R	F	.	G	H	V	F	L	F	D	T	G	T	S	N	G	N	L	T	G	Q	A	R	A	M	N	S	V	D	F	K	P	S	R	P	F	R	I	I	S	G	S	D	D
Template Known Secondary structure		T										S	S	S		.								T	T	S										S	S		S	.						T	T	T			B		B						S	S									S	S	S	S								T	T
Template Predicted Secondary structure																.																								.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.						360	.	.	.	.
Predicted Secondary structure																																																																								.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.
Query Sequence		G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	L	T	S	L	R	Q	I	N	R	K	T	R	E	V	I	G	I	A	F	D	D	P	A	.	.	.	.	.	Y	V	T	W	I
Query Conservation																																																																								.	.	.	.	.
Alig confidence			.	.	.																																												.	.	.																					.	.	.	.	.
Template Conservation			.	.	.																																												.	.	.
Template Sequence		N	.	.	.	T	V	A	I	F	E	G	P	P	F	K	F	K	S	T	F	G	E	H	T	K	F	V	H	S	V	R	Y	N	P	D	G	S	L	F	A	S	T	G	G	D	G	T	.	.	.	I	V	L	Y	N	G	V	D	G	T	K	T	G	V	F	E	D	D	S	L	K	N	V	A	H	S	G	S	V	F
Template Known Secondary structure		S	.	.	.							T	T	T	B										S	S									T	T	S	S							T	T	S		.	.	.						T	T	T								B		T	T	S	S	S		S	S	S	S
Template Predicted Secondary structure			.	.	.																																												.	.	.
Template SS confidence
		170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.				.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	T	P	D	T	L	F	E	L	D	M	D	T	G	E	R	R	V	L	K	Q	T
Query Conservation
Alig confidence																			.	.	.	.
Template Conservation																			.	.	.	.
Template Sequence		G	L	T	W	S	P	D	G	T	K	I	A	S	A	S	A	D	.	.	.	.	K	T	I	K	I	W	N	V	A	T	L	K	V	E	K	T	I	P	V
Template Known Secondary structure							T	T	S	S							T	T	.	.	.	.	S							T	T	T	T
Template Predicted Secondary structure																			.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260					.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions