Job Description P24555 Confidence 95.87% Date Thu Jan 5 11:41:42 GMT 2012 Rank 322 Aligned Residues 249 % Identity 9% Template c1l0qC_ PDB info PDB header:protein binding Chain: C: PDB Molecule:surface layer protein; PDBTitle: tandem yvtn beta-propeller and pkd domains from an archaeal surface2 layer protein Resolution 2.40 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		M	G	G	M	A	I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	.	E	L	L	D	N	V	E	P	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T	L	L	P	Y	Q	V	W	R	H	A	I	G
Query Conservation																																									.
Alig confidence																							.	.	.	.															.																												.	.	.	.	.							.	.
Template Conservation																							.	.	.	.																																											.	.	.	.	.							.	.
Template Sequence		P	X	G	A	V	I	S	P	D	G	T	K	V	Y	V	A	N	A	H	S	N	.	.	.	.	D	V	S	I	I	D	T	A	T	N	N	V	I	A	T	V	P	A	G	S	S	P	Q	G	V	A	V	S	P	D	G	K	Q	V	Y	V	T	N	X	A	S	S	.	.	.	.	.	T	L	S	V	I	D	.	.
Template Known Secondary structure									T	T	S	S							T	T	T	T	.	.	.	.							T	T	T	T									S	S	S								T	T	S	S							T	T	T	T	.	.	.	.	.							.	.
Template Predicted Secondary structure																							.	.	.	.																																											.	.	.	.	.							.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.					.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.						.	.	.	100	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	R	R	K	D	H	E	Y	S	L	D	H	Y	Q	H	R	F	Y	L	R	S	N
Query Conservation
Alig confidence		.	.																																						.	.	.	.
Template Conservation		.	.																																						.	.	.	.
Template Sequence		.	.	T	T	S	N	T	V	A	G	T	V	K	T	G	K	S	P	L	G	L	A	L	S	P	D	G	K	K	L	Y	V	T	N	N	G	D	K	T	.	.	.	.	V	S	V	I	N	T	V	T	K	A	V	I	N	T	V	S	V	G	R	S	P	K	G	I	A	V	T	P	D	G	T	K	V	Y	V	A	N
Template Known Secondary structure		.	.	T	T	T	T									S	S	S								T	T	S	S							T	T	T	T		.	.	.	.						T	T	T	T										S	S								T	T	S	S
Template Predicted Secondary structure		.	.																																						.	.	.	.
Template SS confidence
				103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	G	K	N	F	G	L	Y	R	T	R	M	R	D	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	R	Q	R	G	L	T	S	L	R	Q	I	N	R	K	T	R	E	V	I	G	I	A	F	D	D	P	A	Y	V	T	W	I	A	Y	N
Query Conservation
Alig confidence												.	.	.																																																							.	.	.
Template Conservation												.	.	.																																																							.	.	.
Template Sequence		F	D	S	X	S	I	S	V	I	D	.	.	.	T	V	T	N	S	V	I	D	T	V	K	V	E	A	A	P	S	G	I	A	V	N	P	E	G	T	K	A	Y	V	T	N	V	D	K	Y	F	N	T	V	S	X	I	D	T	G	T	N	K	I	T	A	R	I	.	.	.	P	V	G	P	D	P	A	G	I	A
Template Known Secondary structure		T	T	T	T							.	.	.	T	T	T	T									S	S									T	T	S	S									S	S									T	T	T	T							.	.	.				S	S
Template Predicted Secondary structure												.	.	.																																																							.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.				.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240				.	.	.	.	.	.	.	.	.	250
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	P	E	T	A	R	L	R	Y	G	Y	S	S	M	T	T	P	D	T	L	F	E	L	D	M	D	T	G	E	R	R	V	L	K	Q	T
Query Conservation
Alig confidence																.	.	.	.
Template Conservation																.	.	.	.
Template Sequence		V	T	P	D	G	K	K	V	Y	V	A	L	S	F	.	.	.	.	N	T	V	S	V	I	D	T	A	T	N	T	I	T	A	T	X	A	V
Template Known Secondary structure				T	T	S	S									.	.	.	.								T	T	T	T
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.					.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions