Job Description P24555 Confidence 98.68% Date Thu Jan 5 11:41:42 GMT 2012 Rank 203 Aligned Residues 273 % Identity 8% Template c1gq1B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form Resolution 1.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.							.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																																												.	.																					.	.	.	.	.	.
Query SS confidence																																												.	.																					.	.	.	.	.	.
Query Sequence		I	T	P	D	N	T	I	M	A	L	A	E	D	F	L	S	R	R	Q	Y	G	I	R	F	R	N	L	E	T	G	N	W	Y	P	E	L	L	D	N	V	E	P	.	.	S	F	V	W	A	N	D	S	W	I	F	Y	Y	V	R	K	H	P	V	T	.	.	.	.	.	.	L	L	P	Y	Q	V	W	R	H	A
Query Conservation																																												.	.																					.	.	.	.	.	.
Alig confidence																			.	.	.	.																						.	.																					.	.	.	.	.	.
Template Conservation																			.	.	.	.
Template Sequence		E	G	W	E	D	K	Y	A	I	A	G	A	Y	W	P	P	Q	.	.	.	.	Y	V	I	M	D	G	E	T	L	E	P	K	K	I	Q	S	T	R	G	M	T	Y	D	E	Q	E	Y	H	P	E	P	R	V	A	A	I	L	A	S	H	Y	R	P	E	F	I	V	N	V	K	E	T	G	K	I	L	L	V	D
Template Known Secondary structure		T	T		T	T	T									T	T		.	.	.	.						T	T	T														T	T	T					S											S	S	S	S							T	T	T	T
Template Predicted Secondary structure																			.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.					.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.					.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																																															.	.	.	.
Query SS confidence																																																															.	.	.	.
Query Sequence		I	G	T	P	A	S	Q	D	K	L	I	Y	E	E	K	D	D	T	Y	Y	V	S	L	H	K	T	T	S	K	H	Y	V	V	I	H	L	A	S	A	T	T	S	E	V	R	L	L	D	A	E	M	A	D	A	E	P	F	V	F	L	P	.	.	.	.	R	R	K	D	H	E	Y	S	L	D	H	Y	Q	H	R
Query Conservation																																																															.	.	.	.
Alig confidence																.	.																									.	.																				.	.	.	.
Template Conservation																.	.																									.	.
Template Sequence		Y	T	D	L	D	N	L	K	T	T	E	I	S	A	.	.	E	R	F	L	H	D	G	G	L	D	G	S	H	R	Y	F	I	T	A	A	N	A	R	N	.	.	K	L	V	V	I	D	T	K	E	G	K	L	V	A	I	E	D	T	G	G	Q	T	P	H	P	G	R	G	A	N	F	V	H	P	T	F	G	P
Template Known Secondary structure		T	T		S	S	S									.	.		T	T								T	T	S								G	G	G	T	.	.							T	T	T	T									S	S	S	S	B			T	T							T	T	T
Template Predicted Secondary structure																.	.																									.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340			.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.			.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.						.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.					.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																							.	.	.	.	.																															.	.	.	.
Query SS confidence																							.	.	.	.	.																															.	.	.	.
Query Sequence		F	Y	L	R	S	N	R	H	G	K	N	F	G	L	Y	R	T	R	M	R	D	.	.	.	.	.	E	Q	Q	W	E	E	L	I	P	P	R	E	N	I	M	L	E	G	F	T	L	F	T	D	W	L	V	V	E	E	.	.	.	.	R	Q	R	G	L	T	S	L	R	Q	I	N	R	K	T	R	E	V	I	G
Query Conservation																							.	.	.	.	.																															.	.	.	.
Alig confidence																							.	.	.	.	.																															.	.	.	.
Template Conservation
Template Sequence		V	W	A	T	S	H	M	G	D	D	S	V	A	L	I	G	T	D	P	E	G	H	P	D	N	A	W	K	I	L	D	S	F	P	A	L	G	G	G	S	L	F	I	K	T	H	P	N	S	Q	Y	L	Y	V	D	A	T	L	N	P	E	A	E	I	S	G	S	V	A	V	F	D	I	K	A	M	T	G	D	G
Template Known Secondary structure							B	S	S	S	S									T	T	T	S	T	T	T	B	T	S								S		S									T	T		S							T	T		S	S					T							G	G	G			S	S	S
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
		353	.	.	.													.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380		.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.																									.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.																									.
Query Sequence		I	A	F	D	.	.	.	.	.	.	.	.	.	.	.	.	D	P	A	Y	V	T	W	I	A	Y	N	P	E	P	E	T	A	R	L	R	Y	G	Y	S	.	S	M	T	T	P	D	T	L	F	E	L	D	M	D	T	G	E	R	R	V	L	K	Q	T	E	V	P	G	F	Y	A	A	N	Y
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.																									.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation
Template Sequence		S	D	P	E	F	K	T	L	P	I	A	E	W	A	G	I	T	E	G	Q	P	R	V	V	Q	G	E	F	N	K	D	G	T	E	V	W	F	S	V	W	N	G	K	D	Q	E	S	A	L	V	V	V	D	D	K	T	L	E	L	K	H	V	I	K	D	E	R	L	V	T	P	T	G	K	F
Template Known Secondary structure		S														T			S	S											T	T	S	S										T	T	S									T	T	T	T									T	T			S
Template Predicted Secondary structure
Template SS confidence
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions