Job Description P16430 Confidence 30.13% Date Thu Jan 5 11:35:06 GMT 2012 Rank 5 Aligned Residues 194 % Identity 11% Template c3rkoM_ PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	G	V	M	L	T	I	A	T	A	L	P	V	V	T	V	G	S	P	L	P	Q	L	G	D	L	I	T	L	L	Y	L	F	A	I	A	R	F	F	F	A	I	S	G	L	D	T	G	S	P	F	T	A	I	G	A	S	R	E	A	M	L	G	V	L	V	E	P	M	L	L	L	G	L	W	V	A	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	F	A	P	I	A	M	W	L	G	V	I	G	I	F	Y	G	A	W	M	A	F	A	Q	T	D	I	K	R	L	I	A	Y	T	S	V	S	H	M	G	F	V	L	I	A	I	Y	T	G	S	Q	L	A	Y	Q	G	A	V	I	Q	M	I	A	H	G	L	S	A	A	G	L	F	I	L	C	G	Q	L	Y	E
Template Known Secondary structure																								T		S	B																					T	S
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	G	S	T	N	I	S	N	I	T	D	T	V	Y	H	W	P	L	S	Q	S	I	P	L	V	L	A	L	C	A	C	A	F	A	T	F	I	E	M	G	K	L	P	F	D	L	A	E	A	E	Q	E	L	Q	E	G	P	L	S	E	Y	S	G	S	G	F	G	V	M	K	W	G	I	S	L	K	Q	L	V
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.																																								.
Template Conservation														.	.	.	.	.	.	.	.																																								.
Template Sequence		R	I	H	T	R	D	M	R	M	M	G	G	.	.	.	.	.	.	.	.	L	W	S	K	M	K	W	L	P	A	L	S	L	F	F	A	V	A	T	L	G	M	P	G	T	G	N	F	V	G	E	F	M	I	L	F	G	S	F	.	Q	V	V	P	V	I	T	V	I	S	T	F	G	L	V	F	A	S	V	Y
Template Known Secondary structure							B	G	G	G			S	.	.	.	.	.	.	.	.	G	G	G	T		S	S													S			T	T	S															.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.																																								.
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.									.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.		.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	Q	M	F	V	G	V	F	I	P	W	G	Q	M	E	T	F	T	A	G	G	L	L	L	A	L	V	I	A	I	V	K	L	V	V	G	V	L	V	I	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	A	M	L	H	R	A	Y	F	G	K	A	K	S	Q	I	A	S	Q	E	L	P	G	M	S	L	R	E	L	F	M	I	L	L	L	V	V	L	L	V	L	L
Template Known Secondary structure											S	S	S	S		S	S	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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