Job Description P26459 Confidence 31.02% Date Thu Jan 5 11:42:55 GMT 2012 Rank 9 Aligned Residues 230 % Identity 19% Template d1xmea1 SCOP info Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Resolution 2.30

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.										.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.
Query Sequence		W	Q	F	A	L	T	A	L	Y	H	F	L	F	V	P	L	T	L	G	L	I	F	L	L	A	I	M	E	T	I	Y	V	V	T	G	.	.	.	.	.	.	.	.	.	K	T	I	Y	R	D	M	T	R	F	W	G	K	L	F	G	I	N	F	A	L	G	V	A	T	G	L	T	M	E	F	Q	F	G	T	N
Query Conservation																																					.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	K	M	I	H	S	V	L	T	L	F	V	A	V	P	S	L	M	T	A	F	T	V	A	A	S	L	E	F	A	G	R	L	R	G	G	R	G	L	F	G	W	I	R	A	L	P	W	D	N	P	A	F	V	A	P	V	L	G	L	L	G	F	I	P	G	G	A	G	G	I	V	N	A	S	F	T	L	D	Y
Template Known Secondary structure																																			T	T			S	T	T						S		T	T																									T	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		W	S	F	Y	S	N	Y	V	G	D	I	F	G	A	P	L	A	M	E	A	L	M	A	F	F	L	E	S	T	F	V	G	L	F	F	F	G	W	Q	R	L	N	K	.	.	Y	Q	H	L	L	V	T	W	L	V	A	F	G	S	N	L	S	A	L	W	I	L	N	A	N	G	W	M	Q	Y	P	T	G	A	H
Query Conservation																																													.	.
Alig confidence																																													.	.																										.						.	.	.	.
Template Conservation																																																																								.						.	.	.	.
Template Sequence		V	V	H	N	T	A	W	V	P	G	H	F	H	L	Q	V	A	S	L	V	T	L	T	A	M	G	S	L	Y	W	L	L	P	N	L	T	G	K	P	I	S	D	A	Q	R	R	L	G	L	A	V	V	W	L	W	F	L	G	M	M	I	M	A	V	G	L	H	W	A	G	.	L	L	N	V	P	.	.	.	.
Template Known Secondary structure				T	T	B	T										T	T	T									T																																												.		T	T		B	.	.	.	.
Template Predicted Secondary structure																																																																								.						.	.	.	.
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.		.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.																						.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	D	I	D	T	L	R	M	E	M	T	S	F	S	E	L	V	F	N	P	V	S	Q	V	K	F	V	H	T	V	M	A	G	Y	V	T	G	A	M	F	I	M	A	I	S	A	W	Y	L	L	R	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	N	V	A	L
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	R	R	A	Y	I	A	Q	V	P	D	A	Y	P	H	A	A	V	P	M	V	F	N	V	L	A	G	I	V	L	L	V	A	L	L	L	F	I	Y	G	L	F	S	V	L	L	S	R	E	R	K	P	E	L	A	E	A	P	L	P	F	A	E	V	I	S	G	P	E	D	R	R	L	V	L
Template Known Secondary structure		.	.	.	.	.	.	S	S			G	G	G	S	G	G	G		G	G	G																														T										S	S							B				S	S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	F	A	I	G	S	V	F	G	T	L	A	I	I	G	T	L	Q	L	G	D	S	S	A	Y	E	V	A	Q	V	Q	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	M	D	R	I	G	F	W	F	A	V	A	A	I	L	V	V	L	A	Y	G	P	T	L	V	Q	L	F	G	H	L	N	P
Template Known Secondary structure				T																											S
Template Predicted Secondary structure
Template SS confidence
		523	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions