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Job DescriptionP26459
Confidence5.90%DateThu Jan 5 11:42:55 GMT 2012
Rank31Aligned Residues174
% Identity13%Templatec3eh4A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:cytochrome c oxidase subunit 1; PDBTitle: structure of the reduced form of cytochrome ba3 oxidase from thermus2 thermophilus
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4950.........60.........70........ .80.........90.........100.........110.......
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Query Sequence  RDMTRFWGKLFGINFALGVATGLTMEFQFG. . . . . . . . . . . TNWSFYSNYVGDIFGAPLAMEALMAFFLESTFVGLFFFG
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Template Sequence  KKATLYFLVLGFLALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQGLTLHGVLNAIVFTQLFAQAIMVYLPAREL
Template Known Secondary structure  TT


STT


T
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   18.20.........30.........40.........50.........60.........70.........80.........90.......
 
   118.120.........130.........140.........150.........160.........170.........180.........190.......
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Query Sequence  WQRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFDIDTLRMEMTSFSELVFNPVSQVKFVHTVMAGYVTGAM
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Template Sequence  NMRPNMGLMWLSWWMAFIGLVVAALPLLANEA. . . TVLYTFYPPLKG. . . . . . . . . . . . HWAFYLGASVFVLSTWVSIYI
Template Known Secondary structure  T



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   98.100.........110.........120......... 130.........140. ........150.........160..
 
   198.200........ .210.........220.........230.......
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Query Sequence  FIMAISAWYLL. RGRERNVALRSFAIGSVFGTLAIIGTLQL
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Template Sequence  VLDLWRRWKAANPGKVTPLVTYMAVVFWLMWFLASLGLVLE
Template Known Secondary structure  STT



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   163......170.........180.........190.........200...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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