Job Description P76516 Confidence 2.67% Date Thu Jan 5 12:23:57 GMT 2012 Rank 63 Aligned Residues 77 % Identity 17% Template c2kgfA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:capsid protein p27; PDBTitle: n-terminal domain of capsid protein from the mason-pfizer2 monkey virus Resolution UNK

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.											.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.
Query Sequence		T	F	T	N	K	E	L	I	K	E	I	K	E	R	I	S	S	L	E	V	R	D	D	I	E	R	R	A	Y	E	I	A	L	V	S	L	E	V	E	P	D	E	.	.	.	.	.	.	.	.	.	.	R	E	A	Y	E	L	F	M	E	K	R	F	G	D	L	V	D	R	R	R	A	K	N	G	D	N	E	Y
Query Conservation																																												.	.	.	.	.	.	.	.	.	.
Alig confidence																																.												.	.	.	.	.	.	.	.	.	.
Template Conservation																																.
Template Sequence		N	G	F	D	F	A	V	I	K	E	L	K	T	A	A	S	Q	Y	G	A	T	A	P	Y	T	L	A	I	V	E	.	S	V	A	D	N	W	L	T	P	T	D	W	N	T	L	V	R	A	V	L	S	G	G	D	H	L	L	W	K	S	E	F	F	E	N	C	R	D	T	A	K	R	N	Q	Q	A	G	N	G
Template Known Secondary structure																			T		T	T	S									.				T	S	B																S																									T		S
Template Predicted Secondary structure																																.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		73	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	W	D	M	T	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	D	F	D	M	L	T	G
Template Known Secondary structure			S	S	S	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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