Job Description P0AEF8 Confidence 99.55% Date Thu Jan 5 11:23:12 GMT 2012 Rank 7 Aligned Residues 289 % Identity 15% Template c3fh6F_ PDB info PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli Resolution 4.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.					.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		M	L	Q	F	I	L	R	R	L	G	L	V	I	P	T	F	.	.	.	.	I	G	I	T	L	L	T	F	A	F	V	H	M	I	P	G	D	P	V	M	I	M	A	G	E	R	G	I	S	P	E	R	H	A	Q	L	L	A	E	L	G	L	D	K	P	M	W	Q	Q	Y	L	H	Y	I	W	G	V	M	H	G
Query Conservation																		.	.	.	.
Alig confidence																		.	.	.	.																		.	.																									.	.	.	.	.	.	.	.
Template Conservation																																							.	.																									.	.	.	.	.	.	.	.
Template Sequence		I	T	T	L	I	L	S	S	A	G	L	Y	I	Y	V	Y	P	G	M	A	G	M	G	L	F	V	L	F	P	L	V	C	T	I	A	I	A	.	.	F	T	N	Y	S	S	T	N	Q	L	T	F	E	R	A	Q	E	V	L	L	D	R	S	K	.	.	.	.	.	.	.	.	N	F	T	R	V	F	T	D	E
Template Known Secondary structure																											T									T	T	S	.	.	S	S	S		S	S	S		S	S											T				.	.	.	.	.	.	.	.	T	T					S		S
Template Predicted Secondary structure																																							.	.																									.	.	.	.	.	.	.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.									.	.	.	.	.	110	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	G	I	S	M	K	S	R	I	P	V	W	E	E	F	V	P	R	F	Q	A	T	L	E	L	G	V	C	A	M	I	F	A	T	A	V	G	I	P	V	G	V	L	A	A	V	K	R	G	S	I	F	D	H	T	A	V	G	L	A	L	T	G	Y	S	M	P	I	F	W	W	G	M	M	L	I	M	L	V
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.																																		.
Template Conservation							.	.	.	.	.	.	.	.	.	.																																		.
Template Sequence		G	I	Q	K	P	.	.	.	.	.	.	.	.	.	.	F	L	A	I	F	V	W	T	V	V	F	S	L	I	T	V	F	L	T	V	A	V	G	M	V	L	A	C	L	V	Q	W	E	.	A	L	R	G	K	A	V	Y	R	V	L	L	I	L	P	Y	A	V	P	S	F	I	S	I	L	I	F	K	G	L	F
Template Known Secondary structure		S	S		S		.	.	.	.	.	.	.	.	.	.																															T		S	.	S	S	S															S		S											S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.																																		.
Template SS confidence
		272	.	.	.	.											.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	H	W	N	L	T	P	V	S	G	R	V	S	D	M	V	F	L	D	D	S	N	P	L	T	G	F	M	L	I	D	T	A	I	W	G	E	D	G	N	F	I	D	A	V	A	H	M	I	L	P	A	I	V	L	G	T	I	P	L	A	V	I	V	R	M	T	R	S	S	M	L	E	V	L	G	E	D	Y
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.
Template Sequence		N	Q	S	F	G	E	I	N	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	S	A	L	F	G	V	K	P	A	W	F	S	D	P	T	T	A	R	T	M	L	I	I	V	N	T	W	L	G	Y	P	Y	M	M	I	L	C	M	G	L	L	K	A	I	.	P	D	D	L
Template Known Secondary structure			S	S	S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S					S	S	S	S																															S	.
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.
Template SS confidence
		341	.	.	.	.	.	.	.	.																					350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.		.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.															.	.	.	290	.	.	.	.	.					.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Query Sequence		I	R	T	A	R	A	K	G	L	T	R	M	R	V	I	I	V	H	A	L	R	N	A	M	L	P	V	V	T	V	I	G	L	Q	V	G	T	L	L	A	G	A	I	L	T	E	T	I	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	P	G	L	G	R	W	L	I	.	.	.	.	D	A	L
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template Conservation
Template Sequence		Y	E	A	S	A	M	D	G	A	G	P	F	Q	N	F	F	K	I	T	L	P	L	L	I	K	P	L	T	P	L	M	I	A	S	F	A	F	N	F	N	N	F	V	L	I	Q	L	L	T	N	G	G	P	D	R	L	G	T	T	T	P	A	G	Y	T	D	L	L	V	N	Y	T	Y	R	I	A	F	E	G	G
Template Known Secondary structure												S							T	T	T	T	T	T																	T										S	S		S			S	S		S	S	S			S	S										T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	R	D	Y	P	V	V	Q	G	G	V	L	L	V	A	T	M	I	I	L	V	N	L	L	V	D	L	L	Y	G	V	V	N	P	R	I	R	H	K	K
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.
Template Sequence		G	G	Q	D	F	G	L	A	A	A	I	A	T	L	I	F	L	L	V	G	A	L	A	I	V	N	L	.	.	.	.	.	.	.	.	K	A	T	R	M	K
Template Known Secondary structure		S		S	S																								.	.	.	.	.	.	.	.			S	S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.
Template SS confidence
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.									.	.	.	510	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions