Job Description P31452 Confidence 100.00% Date Thu Jan 5 11:47:44 GMT 2012 Rank 1 Aligned Residues 347 % Identity 15% Template c3qnqD_ PDB info PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Resolution 3.29 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	I	Q	R	F	G	G	A	M	F	T	P	V	L	L	F	P	F	A	G	I	V	V	G	L	A	I	L	L	Q	N	P	M	F	V	G	E	S	L	T	D	P	N	S	L	F	A	Q	I	V	H	I	I	E	E	G	G	W	T	V	F	R	N	M	P	L	I	F	A	V	G	L	P	I	G	L	A	K	Q
Query Conservation
Alig confidence																																		.	.	.	.
Template Conservation																																		.	.	.	.
Template Sequence		R	H	L	L	A	I	R	D	G	L	V	L	T	M	P	F	L	I	I	G	S	I	F	L	I	I	S	T	L	P	I	P	.	.	.	.	G	Y	S	E	F	M	A	S	L	F	G	K	N	W	N	V	A	L	G	Y	P	V	S	A	T	F	N	I	M	A	L	I	A	V	F	G	I	A	Y	R	L	G	E	Y
Template Known Secondary structure												G	G	G	T	T													T				T	.	.	.	.	T	T	T	T						T		S			T	T	G	G	G								T	T
Template Predicted Secondary structure																																		.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.					.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	G	R	A	C	L	A	V	M	V	S	F	L	T	W	N	Y	F	I	N	A	M	G	M	T	W	G	S	Y	F	G	V	D	F	T	Q	D	A	V	A	G	S	G	L	T	M	M	A	G	I	K	T	L	D	T	S	I	I	G	A	I	I	I	S	G	I	V	T	A	L	H	N	R	L	F	D	K	K	L
Query Conservation
Alig confidence																																							.	.	.
Template Conservation																																							.	.	.
Template Sequence		Y	K	V	D	A	L	A	S	G	A	L	S	L	V	T	F	L	L	A	T	P	F	Q	V	A	Y	I	M	P	G	T	K	E	S	I	L	V	.	.	.	D	G	V	I	P	A	A	L	M	G	S	Q	G	L	F	V	A	M	I	I	A	I	I	S	T	E	I	Y	R	F	L	V	Q	K	K	M	I	I	K	M
Template Known Secondary structure			T	S																	S		S							T	T	T	S						.	.	.		S				T	T	T	T	T	T	T	T																					T	T		S
Template Predicted Secondary structure																																							.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.						.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210				.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.																	.	.	.
Query SS confidence																																		.	.	.	.	.																	.	.	.
Query Sequence		P	V	F	L	G	I	F	Q	G	T	S	Y	V	V	I	I	A	F	L	V	M	I	P	C	A	W	L	T	L	L	G	W	.	.	.	.	.	P	K	V	Q	M	G	I	E	S	L	Q	A	F	L	R	S	.	.	.	A	G	A	L	G	V	W	V	Y	T	F	L	E	R	I	L	I	P	T	G	L	H	H	F
Query Conservation																																		.	.	.	.	.																	.	.	.
Alig confidence																																		.	.	.	.	.																	.	.	.
Template Conservation
Template Sequence		P	E	T	V	P	P	A	V	T	R	S	F	A	A	L	I	P	G	F	I	V	V	T	V	V	W	I	I	R	L	I	F	E	H	T	T	F	G	S	I	H	N	V	V	G	K	L	L	Q	E	P	L	S	I	L	G	A	S	L	W	G	A	V	I	A	V	I	L	V	H	V	L	W	A	C	G	I	H	G	A
Template Known Secondary structure			T	T	S																														T	S	S	S		S									T	T	T								S																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	G	Q	F	I	F	G	P	A	A	V	E	G	G	I	Q	M	Y	W	A	Q	H	L	Q	E	F	S	L	S	A	E	P	L	K	S	L	F	P	E	G	G	F	A	L	H	G	N	S	K	I	F	G	A	V	G	I	S	L	A	M	Y	F	T	A	A	P	E	N	R	V	K	V	A	G	L	L	I	P	A
Query Conservation
Alig confidence																		.	.	.	.	.																																																								.	.	.	.
Template Conservation																		.	.	.	.	.																																																								.	.	.	.
Template Sequence		T	I	V	G	G	V	M	S	P	I	W	L	S	L	M	D	.	.	.	.	.	Q	N	R	I	A	F	Q	A	G	Q	D	V	P	N	T	I	T	A	Q	F	F	D	L	W	I	Y	M	G	G	S	G	A	T	L	A	L	V	V	G	M	L	L	F	A	R	S	Q	Q	L	K	S	L	G	R	L	.	.	.	.
Template Known Secondary structure				T														.	.	.	.	.								T	T						S										T	S		S	S	S	S	S	T													S										.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.																																																								.	.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.						.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	T	A	M	L	V	G	I	T	E	P	L	E	F	T	F	L	F	I	S	P	L	L	F	A	V	H	A	V	L	A	A	S	M	S	T	V	M	Y	L	F	G	V	V	G	N	M	G	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	A	P	G	I	F	N	I	N	E	M	V	T	F	G	M	P	I	V	M	N	P	L	L	L	I	P	F	I	V	V	P	V	V	L	T	I	V	S	Y	F	A	M	E	W	G	L	V	A	R
Template Known Secondary structure		T	S					T	T									T	T		T	T		T	T	T																					T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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