Job Description P78061 Confidence 100.00% Date Thu Jan 5 12:33:07 GMT 2012 Rank 2 Aligned Residues 433 % Identity 22% Template c3ng0A_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of glutamine synthetase from synechocystis sp. pcc2 6803 Resolution 2.80 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		F	T	Q	E	V	K	R	Y	L	E	R	Y	P	N	T	Q	Y	V	D	V	L	L	T	D	L	N	G	C	F	R	G	K	R	I	P	V	S	S	L	K	K	.	.	L	E	K	G	C	Y	F	P	A	S	V	F	A	M	D	I	L	G	N	V	V	E	E	A	G	L	G	Q	E	M	G	E	P	D	R	T	C
Query Conservation																																											.	.
Alig confidence														.																													.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	P	Q	E	V	L	K	W	I	Q	D	E	.	N	I	K	I	I	D	L	K	F	I	D	T	P	G	I	W	Q	H	C	S	F	Y	Y	D	Q	L	D	E	N	S	F	T	E	G	I	P	F	D	G	S	S	I	.	.	.	.	.	.	.	.	.	.	.	.	R	G	W	K	A	I	N	E	S	D	M	C	M
Template Known Secondary structure													T	.	T											S	S	S									G	G	G			G	G	G	G	T	T						T	T	S	S	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S			G	G	G
Template Predicted Secondary structure														.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.													.	.	60	.	.	.	.	.	.	.	.	.	70
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																												.																											.	.																									.
Query SS confidence																												.																											.	.																									.
Query Sequence		V	P	V	L	G	S	L	T	P	S	A	A	D	P	E	F	I	G	Q	M	L	L	T	M	V	D	.	E	D	G	A	P	F	D	V	E	P	R	N	V	L	N	R	L	W	Q	Q	L	R	Q	R	G	L	.	.	F	P	V	V	A	V	E	L	E	F	Y	L	L	D	R	Q	R	D	A	E	G	Y	L	Q	.
Query Conservation																												.																											.	.																									.
Alig confidence																												.																											.	.																									.
Template Conservation
Template Sequence		V	P	D	P	N	T	A	T	I	D	P	F	C	K	E	P	T	L	S	M	I	C	S	I	K	E	P	R	T	G	E	W	Y	N	R	D	P	R	T	I	A	A	K	A	A	E	Y	L	R	G	T	G	I	A	D	T	V	Y	F	G	P	E	A	E	F	F	L	F	D	D	I	R	F	G	Q	T	E	N	S	S
Template Known Secondary structure					G	G	G					T	T		S	S												T	T	T	S	S	B		T	T																	T	S		S														S								S	S
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
																		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	C	A	P	G	T	D	D	R	N	T	Q	S	Q	V	Y	S	V	D	N	L	N	H	F	A	D	V	L	N	D	I	D	E	L	A	Q	L	Q	L	I	P	A	D	G	A	V	A	E	A	S	P	.	G	Q	F	E	I	N	L	Y	H	T	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Template Conservation
Template Sequence		Y	Y	F	A	D	S	V	E	G	R	W	N	T	G	R	E	E	E	G	G	N	L	G	Y	K	P	G	Y	K	Q	G	Y	F	P	V	A	P	T	D	T	A	Q	D	I	R	T	E	M	L	L	T	M	A	A	F	G	V	P	I	E	K	H	H	H	E	V	A	S	G	G	Q	N	E	L	G	I	K	F	D	K
Template Known Secondary structure								T	T		G	G	G	T	T				T	T									T	T			S	S			T	T	T																	T	T										S	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		N	V	L	E	A	C	D	D	A	L	A	L	K	R	L	V	R	L	M	A	E	K	H	K	M	H	A	T	F	M	A	K	P	Y	E	E	H	A	G	S	G	M	H	I	H	I	S	M	Q	N	N	R	G	E	N	V	L	S	D	A	E	G	E	.	D	S	P	L	L	K	K	M	L	A	G	M	I	D	L	M
Query Conservation																																																																	.
Alig confidence		.																																																			.												.
Template Conservation		.																																																			.
Template Sequence		.	L	V	N	S	A	D	N	L	M	I	Y	K	Y	V	I	K	N	V	A	K	K	Y	G	K	T	V	T	F	M	P	K	P	I	F	N	D	N	G	S	G	M	H	V	H	Q	S	L	W	K	D	.	G	Q	P	L	F	A	G	D	K	Y	A	G	F	S	Q	M	G	L	W	Y	I	G	G	I	L	K	H	A
Template Known Secondary structure		.																						T	T							S		S	S	T	T	S														T	.	T			T	T	B	S	S	S	G	G	G	B
Template Predicted Secondary structure		.																																																			.
Template SS confidence
			231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360			.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		P	S	S	M	A	L	L	A	P	N	V	N	S	Y	R	R	F	Q	P	G	M	Y	V	P	T	Q	A	S	W	G	H	N	N	R	T	V	A	L	R	I	P	C	.	.	G	D	R	H	N	H	R	V	E	Y	R	V	A	G	A	D	A	N	P	Y	L	V	M	A	A	I	F	A	G	I	L	H	G	L	D	N
Query Conservation																																												.	.
Alig confidence																																												.	.
Template Conservation
Template Sequence		P	A	L	L	A	F	T	N	P	T	T	N	S	Y	K	R	L	V	P	G	F	E	A	P	V	N	L	A	Y	S	Q	G	N	R	S	A	S	V	R	I	P	L	S	G	G	N	P	K	A	K	R	L	E	F	R	C	P	D	A	T	S	N	P	Y	L	A	F	A	A	M	L	C	A	G	I	D	G	I	K	N
Template Known Secondary structure									S		S	T	T					B	B	T	T	T	B				B						S		T	T	S	S							S	S		G	G	G							S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.				.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.		.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure																																									.	.	.																	.
Query SS confidence																																									.	.	.																	.
Query Sequence		E	L	P	L	Q	E	E	V	E	G	N	G	L	E	Q	E	G	L	P	F	P	I	R	Q	S	D	A	L	G	E	F	I	E	N	D	H	L	R	R	.	.	.	Y	L	G	E	R	F	C	H	V	Y	H	A	C	K	N	D	.	E	L	L	Q	F	E	R	L	I	T	E	T	E	I	E	W	M	L	K
Query Conservation																																									.	.	.																	.
Alig confidence																																									.	.	.																	.
Template Conservation
Template Sequence		Q	I	D	P	G	E	P	L	D	V	D	I	E	L	A	K	I	P	S	T	P	G	S	L	E	A	A	L	E	A	L	E	K	D	H	E	F	L	T	G	T	G	V	F	S	P	D	F	V	E	S	W	I	E	Y	K	L	D	N	E	V	N	P	M	R	L	R	P	H	P	Y	E	F	S	L	Y	Y	D
Template Known Secondary structure															T	T	S	S		B			S	S											S						T	T	T	S	S																T							S			T							S
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.