Phyre 2 alignment of P22333 with c3gipB

Job Description P22333
Confidence 98.09% Date Thu Jan 5 11:38:52 GMT 2012

Rank 61 Aligned Residues 311

% Identity 11% Template c3gipB_

PDB info PDB header:hydrolase Chain: B: PDB Molecule:n-acyl-d-glutamate deacylase; PDBTitle: crystal structure of n-acyl-d-glutamate deacylase from2 bordetella bronchiseptica complexed with zinc, acetate and3 formate ions.

Resolution 1.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.					.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.																															.	.	.	.	.	.	.	40	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.			.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.			.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	I	D	T	T	.	.	.	.	L	P	.	L	T	D	I	H	R	H	L	D	G	N	I	R	P	Q	T	I	L	E	L	G	R	Q	Y	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	L	P	A	Q	S	L	E	T	L	I	P	H
Query Conservation					.	.	.	.			.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.			.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	W	D	A	S	G	K	I	V	A	P	G	F	I	D	V	H	G	H	D	D	L	M	F	V	E	K	P	D	L	R	W	K	T	S	Q	G	I	T	T	V	V	V	G	N	C	G	V	S	A	A	P	A	P	L	P	G	N	T	A	A	A	L	A	L	L	G	E	T	P	L	F	A	D	V	P	A	Y	F	A	A
Template Known Secondary structure				T	T	S									S	S				T	T						T	T						T	T	T									T	T			S		S				T	T				G	G	G	G	G	T		S	S				S	S
Template Predicted Secondary structure
Template SS confidence
	51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130

	47	.	.	50	.	.	.	.	.						.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure										.	.	.	.	.
Query SS confidence										.	.	.	.	.
Query Sequence	V	Q	V	I	A	N	E	P	D	.	.	.	.	.	L	V	S	F	L	T	K	L	D	W	G	V	K	V	L	A	S	L	D	A	C	R	R	V	A	F	E	N	I	E	D	A	A	R	H	G	L	H	Y	V	E	L	R	F	S	P	G	Y	M	A	M	A	H	Q	L	P	V	A	G	V	V	E	A	V	I	D
Query Conservation										.	.	.	.	.
Alig confidence										.	.	.	.	.																																																.	.	.
Template Conservation																																																														.	.	.
Template Sequence	L	D	A	Q	R	P	M	I	N	V	A	A	L	V	G	H	A	N	L	R	L	A	A	M	R	D	P	Q	A	A	P	T	A	A	E	Q	Q	A	M	Q	D	M	L	Q	A	A	L	E	A	G	A	V	G	F	S	T	G	L	A	Y	Q	.	.	.	P	G	A	V	A	Q	A	A	E	L	E	G	L	A	R	V
Template Known Secondary structure				S			S	S																	S	S	T	T	S																					T								T	T	S	T	.	.	.	T	G	G	G
Template Predicted Secondary structure																																																														.	.	.
Template SS confidence
	131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.				.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.

	122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence	G	V	R	E	G	C	R	T	F	G	V	Q	A	K	L	I	G	I	M	S	R	T	F	G	E	A	A	C	Q	Q	E	L	E	A	F	L	A	H	R	D	Q	.	.	I	T	A	L	D	L	A	G	D	E	L	G	F	P	G	S	L	F	L	S	H	F	N	R	A	R	D	A	G	W	H	I	T	V	H	A	G
Query Conservation																																										.	.
Alig confidence			.	.	.	.	.																																			.	.
Template Conservation			.	.	.	.	.
Template Sequence	A	A	.	.	.	.	.	E	R	R	R	L	H	T	S	H	I	R	N	E	A	D	G	V	E	A	A	V	E	E	V	L	A	I	G	R	G	T	G	C	A	T	V	V	S	H	H	K	C	M	M	P	Q	N	W	G	R	S	R	A	T	L	A	N	I	D	R	A	R	E	Q	G	V	E	V	A	L	D	I	Y
Template Known Secondary structure			.	.	.	.	.		T	T								S		S	S	T	T																						T	T					S	G	G	G	T	T	T															T
Template Predicted Secondary structure			.	.	.	.	.
Template SS confidence
	208	.						210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220					.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.
Query SS confidence																						.	.	.	.
Query Sequence	E	A	A	G	P	E	S	I	W	Q	A	I	R	E	L	G	A	E	R	I	G	.	.	.	.	H	G	V	K	A	I	E	D	R	A	L	M	D	F	L	A	E	Q	Q	I	G	I	E	S	C	L	T	S	N	I	Q	T	S	T	V	A	E	L	A	A	H	P	L	K	T	F	L	E	H	G	I	R	A	S	I
Query Conservation																						.	.	.	.
Alig confidence																						.	.	.	.
Template Conservation
Template Sequence	P	Y	P	G	S	S	T	I	L	I	P	E	R	A	E	T	I	D	D	I	R	I	T	W	S	T	P	H	P	E	C	S	G	E	Y	L	A	D	I	A	A	R	W	G	C	D	K	T	T	A	A	R	R	L	A	P	A	G	A	I	Y	F	A	M	D	E	D	E	V	K	R	I	F	Q	H	P	C	C	M	V
Template Known Secondary structure	S		S								G	G	G	T	T	T	S	S								S	S		G	G	G	T	T		B									T	S											S																			S	T	T
Template Predicted Secondary structure
Template SS confidence
	283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.

	276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.									.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																							.	.	.	.	.	.	.	.													.
Query SS confidence																							.	.	.	.	.	.	.	.													.
Query Sequence	N	T	D	D	P	G	V	Q	G	V	D	I	I	H	E	Y	T	V	A	A	P	A	.	.	.	.	.	.	.	.	A	G	L	S	R	E	Q	I	R	Q	A	Q	.	I	N	G	L	E	M	A	F	L	S	A
Query Conservation																							.	.	.	.	.	.	.	.													.
Alig confidence																							.	.	.	.	.	.	.	.													.
Template Conservation
Template Sequence	G	S	D	G	L	P	N	D	A	R	P	H	P	R	L	W	G	S	F	T	R	V	L	G	R	Y	V	R	E	A	R	L	M	T	L	E	Q	A	V	A	R	M	T	A	L	P	A	R	V	F	G	F	A	E
Template Known Secondary structure						T	T		S	S			T																	T		S	S										T								T		T	T
Template Predicted Secondary structure
Template SS confidence
	363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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