Job Description P22333 Confidence 98.29% Date Thu Jan 5 11:38:52 GMT 2012 Rank 57 Aligned Residues 286 % Identity 12% Template c3dc8B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:dihydropyrimidinase; PDBTitle: crystal structure of dihydropyrimidinase from sinorhizobium meliloti Resolution 1.85 Å

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		2	.	.	.					.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.										.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.			.																																										.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.			.																																										.	.	.	.	.	.	.	.	.
Query Sequence		I	D	T	T	.	.	.	.	L	P	.	L	T	D	I	H	R	H	L	D	G	N	I	R	P	Q	T	I	L	E	L	G	R	Q	Y	N	I	S	L	P	A	Q	S	L	E	T	L	I	P	H	V	Q	.	.	.	.	.	.	.	.	.	V	I	A	N	E	P	D	L	V	S	F	L	T	K	L	D	W	G	V
Query Conservation						.	.	.	.			.																																										.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.			.													.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	A	T	G	C	Y	V	M	P	G	G	I	D	P	H	T	H	L	E	M	P	F	.	.	.	.	.	.	.	.	.	.	.	M	G	T	Y	S	S	D	D	F	E	S	G	T	R	A	A	L	A	G	G	T	T	M	V	V	D	F	A	L	P	S	G	Q	S	L	L	E	A	L	T	M	W	D	N	K	S
Template Known Secondary structure					T	T														T	T				.	.	.	.	.	.	.	.	.	.	.	T	T				S													T	T																										T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.												.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		68	.	70												.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	L	.	.	.	.	.	.	.	.	.	.	.	A	S	L	D	A	C	R	R	V	A	F	E	N	I	E	D	A	A	R	H	G	L	H	Y	V	E	L	R	F	S	P	G	Y	M	A	M	A	H	Q	L	P	V	A	G	V	V	E	A	V	I	D	G	V	R	E	G	C	R	T	F	G	V	Q	A	K	L
Query Conservation					.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.																									.
Template Conservation																																																	.	.	.	.	.	.	.	.																									.
Template Sequence		T	R	A	N	C	D	Y	S	F	H	M	A	I	T	W	W	G	E	Q	V	F	N	E	M	E	T	I	V	K	D	K	G	I	N	T	F	H	F	M	A	Y	K	G	A	L	M	V	.	.	.	.	.	.	.	.	D	D	D	E	M	F	S	S	F	Q	R	C	A	A	L	G	A	L	P	L	V	H	A	E	.
Template Known Secondary structure		T	T		S	S										S		S														S				B			B	S		S	T	T	T	T	B		.	.	.	.	.	.	.	.																T		B				B		S	.
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.																									.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.									.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	I	M	S	R	T	F	G	E	A	A	C	Q	Q	E	L	E	A	F	L	A	H	R	D	Q	I	T	A	L	D	L	A	G	D	E	L	G	F	P	G	S	L	F	L	S	H	F	N	R	A	R	D	A	G	W	H	I	T	V	H	A	G	E	A	A	G	P	E	S	I	W	Q	A	I	R	E	L	G	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	N	G	D	V	V	A	Q	L	Q	A	K	L	L	A	E	G	N	S	G	P	E	A	H	A	Y	S	R	P	A	E	V	E	G	E	A	A	N	R	A	I	M	I	A	D	M	A	G	C	P	V	Y	I	V	H	T	S	C	E	Q	A	H	E	A	I	R	R	A	R	A	K	G	M
Template Known Secondary structure		.	.	.	.	.	.	.	.															T	T			S							T	S																				T						S	S			S													T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
					217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	E	R	I	G	H	G	V	K	A	I	E	D	R	A	L	M	D	F	L	A	E	Q	Q	I	G	I	E	S	C	L	T	S	N	I	Q	T	S	T	V	A	E	L	A	A	H	P	L	K	T	F	L	E	H	G	I	R	A	S	I	N	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																															.	.							.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.							.	.	.	.
Template Sequence		R	V	F	G	E	P	L	I	Q	H	L	T	L	D	E	T	E	Y	F	D	K	D	W	D	H	A	A	R	R	V	M	S	P	.	.	P	F	R	N	K	L	.	.	.	.	H	Q	D	S	L	W	A	G	L	A	S	G	S	L	Q	V	V	A	T	D	H	C	A	F	T	T	E	Q	K	R	F	G	V	G	D
Template Known Secondary structure								B								G	G	G	G	G		S	S							T			S	S	.	.					G	G	.	.	.	.	G											T	S	S				B			B									G	G	G	T	T
Template Predicted Secondary structure																																			.	.							.	.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.					.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
								279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure		.	.	.	.	.	.																											.
Query SS confidence		.	.	.	.	.	.																											.
Query Sequence		.	.	.	.	.	.	D	P	G	V	Q	G	V	D	I	I	H	E	Y	T	V	A	A	P	A	A	G	L	S	R	E	Q	.	I	R	Q	A	Q	I	N	G	L	E	M	A	F	L	S	A	E
Query Conservation		.	.	.	.	.	.																											.
Alig confidence		.	.	.	.	.	.																											.
Template Conservation
Template Sequence		F	T	R	I	P	N	G	T	G	G	L	E	D	R	M	P	M	L	W	T	Y	G	V	A	T	G	R	I	T	M	N	E	F	V	A	V	T	S	T	N	I	A	K	I	L	N	I	Y	P	K
Template Known Secondary structure		G	G	G	S							T	T	T										T	T	T	T	S	S										T							T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions